Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_M04
         (892 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.        31   4.2  
BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.        31   4.2  
AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.       31   4.2  
BC104912-1|AAI04913.1| 1236|Homo sapiens PPFIA2 protein protein.       31   7.4  
AF034799-1|AAC26100.1| 1257|Homo sapiens liprin-alpha2 protein.        31   7.4  
AB210009-1|BAE06091.1| 1258|Homo sapiens PPFIA2 variant protein ...    31   7.4  
BC142728-1|AAI42729.1|  417|Homo sapiens SAMD14 protein protein.       30   9.8  
BC141822-1|AAI41823.1|  417|Homo sapiens SAMD14 protein protein.       30   9.8  
BC047081-1|AAH47081.1|  427|Homo sapiens SAMD14 protein protein.       30   9.8  
BC029872-1|AAH29872.1|  247|Homo sapiens SAMD14 protein protein.       30   9.8  

>BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.
          Length = 299

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 702 EKGGQVSGKRQGRNQESARGSXPGGNA 622
           EKG +VSGKR+GRN  +A  S    +A
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASA 29


>BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.
          Length = 293

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 702 EKGGQVSGKRQGRNQESARGSXPGGNA 622
           EKG +VSGKR+GRN  +A  S    +A
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASA 29


>AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.
          Length = 482

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 702 EKGGQVSGKRQGRNQESARGSXPGGNA 622
           EKG +VSGKR+GRN  +A  S    +A
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASA 29


>BC104912-1|AAI04913.1| 1236|Homo sapiens PPFIA2 protein protein.
          Length = 1236

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -3

Query: 806 MNGGSCTQPRLERT---TYTELRYXQREL*ESATLPEGRKADRYPVSGRVGTRR 654
           M  GS  +P + RT   T  ELRY    L +S +     K  R P  GR+G RR
Sbjct: 534 MRTGSLIEPTIPRTHLDTSAELRYSVGSLVDSQSDYRTTKVIRRPRRGRMGVRR 587


>AF034799-1|AAC26100.1| 1257|Homo sapiens liprin-alpha2 protein.
          Length = 1257

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -3

Query: 806 MNGGSCTQPRLERT---TYTELRYXQREL*ESATLPEGRKADRYPVSGRVGTRR 654
           M  GS  +P + RT   T  ELRY    L +S +     K  R P  GR+G RR
Sbjct: 534 MRTGSLIEPTIPRTHLDTSAELRYSVGSLVDSQSDYRTTKVIRRPRRGRMGVRR 587


>AB210009-1|BAE06091.1| 1258|Homo sapiens PPFIA2 variant protein
           protein.
          Length = 1258

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -3

Query: 806 MNGGSCTQPRLERT---TYTELRYXQREL*ESATLPEGRKADRYPVSGRVGTRR 654
           M  GS  +P + RT   T  ELRY    L +S +     K  R P  GR+G RR
Sbjct: 545 MRTGSLIEPTIPRTHLDTSAELRYSVGSLVDSQSDYRTTKVIRRPRRGRMGVRR 598


>BC142728-1|AAI42729.1|  417|Homo sapiens SAMD14 protein protein.
          Length = 417

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 547 PPVRASQKSTLKSEVAKPDRTIKIPGVSPWXAPSCALLVPTL 672
           P   ASQ+STL  +   P  + KIP   PW    C+    TL
Sbjct: 268 PKKSASQESTLSDDSTPPSSSPKIPS-GPWQEAKCSYPYHTL 308


>BC141822-1|AAI41823.1|  417|Homo sapiens SAMD14 protein protein.
          Length = 417

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 547 PPVRASQKSTLKSEVAKPDRTIKIPGVSPWXAPSCALLVPTL 672
           P   ASQ+STL  +   P  + KIP   PW    C+    TL
Sbjct: 268 PKKSASQESTLSDDSTPPSSSPKIPS-GPWQEAKCSYPYHTL 308


>BC047081-1|AAH47081.1|  427|Homo sapiens SAMD14 protein protein.
          Length = 427

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 547 PPVRASQKSTLKSEVAKPDRTIKIPGVSPWXAPSCALLVPTL 672
           P   ASQ+STL  +   P  + KIP   PW    C+    TL
Sbjct: 278 PKKSASQESTLSDDSTPPSSSPKIPS-GPWQEAKCSYPYHTL 318


>BC029872-1|AAH29872.1|  247|Homo sapiens SAMD14 protein protein.
          Length = 247

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 547 PPVRASQKSTLKSEVAKPDRTIKIPGVSPWXAPSCALLVPTL 672
           P   ASQ+STL  +   P  + KIP   PW    C+    TL
Sbjct: 98  PKKSASQESTLSDDSTPPSSSPKIPS-GPWQEAKCSYPYHTL 138


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,876,088
Number of Sequences: 237096
Number of extensions: 2819196
Number of successful extensions: 11115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11115
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11437206932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)