Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_M04
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      27   0.30 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.70 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   8.6  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +2

Query: 590 WRNPTGL*RYQAFPPGKLPRALSWFRPCRLPDTCPPF 700
           + NP    RYQ  P GK+ R L      RL D  P F
Sbjct: 91  YENPDEEKRYQEHPNGKILRELQTDYDRRLHDNSPSF 127


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 230 LVYCSLYMVTNKAIASQISQIKHF-FHMHSSC 138
           +V C++Y V  + I    ++ KH  F M+++C
Sbjct: 827 IVVCTVYAVLTRKIPEAFNESKHIGFTMYTTC 858


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 621 RRFPLXSSLVRSPGSDPAAYRIPVRLSPFG 710
           R+ P+ + + R PG +P   R+P  LS  G
Sbjct: 358 RKRPMHNVVYR-PGENPVTQRLPAVLSRIG 386


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 164 ALFVKFVMLLLYL*PYISCNKQVNNNNCIH 253
           A+F  F+ +   L P+ SCN   N  NC++
Sbjct: 84  AIFYFFMSMRSEL-PWGSCNNYWNTKNCVN 112


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 582 VRGGETRQDYKDTRRFPLXSSLVRSPGSD 668
           V   ET  ++ DT R P+  SL +SP +D
Sbjct: 171 VEENETYDEF-DTIRIPIVRSLSKSPPND 198


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
 Frame = -3

Query: 227 VYCSLYMVTNKAIASQISQIKHFFHMHSSCGLSKLINVSYHVW----IXINPQLKGDP 66
           ++C+L  V  K +   +  IKH    H++    K +     +W    I    ++KG P
Sbjct: 202 MFCNLENVKLKELRIILEDIKHINTRHNTKNGMKTLLSETDIWEVEQILAKKEIKGVP 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,145
Number of Sequences: 438
Number of extensions: 5574
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)