Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_M02
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0533 - 10325681-10326211,10326260-10326328,10326758-103268...    29   3.8  
03_02_0635 + 9994327-9994644,9995510-9995706,9995806-9995941,999...    29   3.8  
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170...    29   3.8  
12_02_0247 + 16409988-16411367                                         29   5.0  
08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626     29   5.0  
07_03_1686 + 28657337-28658668                                         28   8.8  

>09_02_0533 -
           10325681-10326211,10326260-10326328,10326758-10326855,
           10326968-10327117,10327848-10327976,10328063-10328999
          Length = 637

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
 Frame = +2

Query: 284 CPDGLHFNPSVEWPAYP---CGYPVEVTCVGRGSIQPAQTTPDCPHQYGIFKHPNASPTN 454
           C DG   NP +    +    C  P + +C G  +  P     DCP  Y   +   ++P  
Sbjct: 297 CSDGYQGNPYIRGGCHDIDECKSPQDYSCYGNCNNTPGSHICDCPRGY---ERNASTPNG 353

Query: 455 CGQYRTC 475
           C     C
Sbjct: 354 CKDIDEC 360


>03_02_0635 +
           9994327-9994644,9995510-9995706,9995806-9995941,
           9996019-9996270,9996356-9996588,9996695-9996812,
           9996884-9997036,9997126-9997212,9997407-9997697
          Length = 594

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 209 NGYYKTDANCDTYIECRDYQATNMICPDGLHFNPSVEWP 325
           +G+YK +  C  Y++  D+      CPDG  F+P  + P
Sbjct: 428 HGFYKANGGCG-YVKKPDFMMQT--CPDGNVFDPKADLP 463


>03_01_0216 -
           1700223-1700666,1700749-1700860,1701534-1701837,
           1702358-1702426,1702543-1702657,1702740-1702811,
           1702918-1703016,1703148-1703219,1703394-1703465,
           1704940-1705154,1705277-1705495,1705792-1707076,
           1707270-1707398
          Length = 1068

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 27/84 (32%), Positives = 36/84 (42%)
 Frame = -1

Query: 630 LPIASKGAGGQVKPKNFSASQEGTRSAQSQRLKSGLNASPGGHTMSKARPPTHVRYWPQL 451
           +P AS+G  G ++P  F A+Q G    QSQ    G N  P   +    RP         L
Sbjct: 178 MPAASQG--GALQPTQF-ATQRGM---QSQPPSMGFNQQPPPSSTGFMRPTQPGAPAASL 231

Query: 450 VGEALGCLKMPYWCGQSGVVWAGW 379
            G+  G  ++P   G  G   AGW
Sbjct: 232 QGQGPGINQVPLGGGSMGAP-AGW 254


>12_02_0247 + 16409988-16411367
          Length = 459

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = +3

Query: 42  SXDXGAFGL*SSTRVXTLF-IEKGCSPTSTSPC*WLQAMS---NQHPLLLLPRT*SAKPA 209
           S   G  G   +T+  T+    +G  P S S C   +A +       LLL P       A
Sbjct: 287 SDHGGGDGRNGTTKAATIIPAPEGLKPPSCSRCTSSEAAAAVVTSKQLLLTPSRDRRSVA 346

Query: 210 MVITKQTRIVIHTLN 254
           +++ + TR+ IHTL+
Sbjct: 347 LLVCRTTRVEIHTLD 361


>08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626
          Length = 369

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 539 RCDWADLVPSCDAEKFLGFT 598
           +CDW  ++  C  + FLGFT
Sbjct: 167 QCDWHSILKMCQVQGFLGFT 186


>07_03_1686 + 28657337-28658668
          Length = 443

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = -3

Query: 544 TAAEVWIEC*SRRAYHVESTTTYACSVLATIGGRSVRMFEDAILVRAIR-CCLGRLDAPS 368
           T A V  E  SR+ Y+      ++C V+  +       F DA LV   R    G+   P+
Sbjct: 200 TPAYVAPEILSRKGYNPAKVDIWSCGVVLFVLAAGYLPFNDASLVNMYRKIYAGKFRCPA 259

Query: 367 SYTCHFNWITARICRPFHA-RIKVQTI 290
            ++     +  RI  P  A RI  + I
Sbjct: 260 WFSPELRCLVRRILDPNPATRIDTEEI 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,935,101
Number of Sequences: 37544
Number of extensions: 588449
Number of successful extensions: 1383
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)