Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L24
         (1051 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical ...    30   2.4  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   5.5  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    29   7.3  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    29   7.3  

>AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical
           protein D1037.1 protein.
          Length = 786

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2

Query: 783 PXPPXPPXXLPXXXXSFXPXFPP 715
           P PP PP  LP    SF P  PP
Sbjct: 501 PPPPAPPQFLPNPTDSFRPPTPP 523


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 18/61 (29%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
 Frame = -3

Query: 929 PPXXXPXSPXXXSXPXPXXXPS-XXXXFXXPXXXXPXXXPPPXXXXPFXXPPXPXXXXXX 753
           PP   P  P     P P   P      F  P    P   PPP    P   PP P      
Sbjct: 28  PPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCP--PPPPPPPPPMCPPPPPPMPSYS 85

Query: 752 P 750
           P
Sbjct: 86  P 86


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = -2

Query: 849 PXPXXXPPXXLXPXXXXXPLXXPXPPXPPXXLPXXXXSFXPXFPP 715
           P P   PP              P PP PP  LP       P  PP
Sbjct: 610 PPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPP 654


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = -2

Query: 849 PXPXXXPPXXLXPXXXXXPLXXPXPPXPPXXLPXXXXSFXPXFPP 715
           P P   PP              P PP PP  LP       P  PP
Sbjct: 436 PPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPP 480


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,668,754
Number of Sequences: 27780
Number of extensions: 54659
Number of successful extensions: 260
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2793417546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)