Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L23
         (1388 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M33518-1|AAA35586.1| 2142|Homo sapiens protein ( Human HLA-B-ass...    31   7.5  
M33509-1|AAA35585.1| 2142|Homo sapiens protein ( Human HLA-B-ass...    31   7.5  

>M33518-1|AAA35586.1| 2142|Homo sapiens protein ( Human
            HLA-B-associated transcript 2 (BAT2) gene, 3' end. ).
          Length = 2142

 Score = 31.5 bits (68), Expect = 7.5
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 961  RTXHEXTXRPPNRXNXNPAXHPPXXPG-XRXRGGPP 1065
            +T    T RPP      PA  PP  PG    RGGPP
Sbjct: 389  KTAWAETSRPPETEPGPPAPKPPLPPGDYPDRGGPP 424


>M33509-1|AAA35585.1| 2142|Homo sapiens protein ( Human
            HLA-B-associated transcript 2 (BAT2) mRNA, complete cds.
            ).
          Length = 2142

 Score = 31.5 bits (68), Expect = 7.5
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 961  RTXHEXTXRPPNRXNXNPAXHPPXXPG-XRXRGGPP 1065
            +T    T RPP      PA  PP  PG    RGGPP
Sbjct: 389  KTAWAETSRPPETEPGPPAPKPPLPPGDYPDRGGPP 424


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.307    0.127    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,879,976
Number of Sequences: 237096
Number of extensions: 958745
Number of successful extensions: 1135
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 20224570446
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)