Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L22
         (907 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   3.3  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    22   5.7  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    22   5.7  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 16/82 (19%), Positives = 34/82 (41%)
 Frame = +1

Query: 343 ISDAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGH 522
           +SD   ++K   E     +   ++ ++  +K  I +A       HS     DI+E++  H
Sbjct: 31  VSDNRRSNKPIMEKR---RRARINNSLNELKTLILDAMKKDPARHSKLEKADILEMTVKH 87

Query: 523 MQKFLNEAKGLDATARGKLLEK 588
           +Q    +   + A     ++ K
Sbjct: 88  LQNLQRQQAAMSAATDPSVVSK 109


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/30 (26%), Positives = 11/30 (36%)
 Frame = -3

Query: 707 NAPSFWTKLIK*WLTGSSALGVFVWPS*AN 618
           N    W K +K W    +    + WP   N
Sbjct: 104 NLAKRWPKFVKDWCVVDATFASYGWPKGLN 133


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/30 (26%), Positives = 11/30 (36%)
 Frame = -3

Query: 707 NAPSFWTKLIK*WLTGSSALGVFVWPS*AN 618
           N    W K +K W    +    + WP   N
Sbjct: 104 NLAKRWPKFVKDWCVVDATFASYGWPKGLN 133


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,134
Number of Sequences: 336
Number of extensions: 3884
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25237652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)