Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L21
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    47   3e-06
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    47   4e-06
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    30   0.54 

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 25/63 (39%), Positives = 28/63 (44%)
 Frame = +2

Query: 77  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGILWQTWYEK 256
           M T   KTRKLRGHVS                  AGG  H R + DKYHPG   +    +
Sbjct: 1   MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 257 FPL 265
           F L
Sbjct: 61  FHL 63



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 24/79 (30%), Positives = 39/79 (49%)
 Frame = +1

Query: 265 LXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTC 444
           L KN  + P +NLD+LWTLV  +TR KY        P     QS   +V  + + P T  
Sbjct: 63  LMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDTPV 122

Query: 445 HSKSKVLLKISREENQGCG 501
             +++ + + + E+ +  G
Sbjct: 123 IIQTRYVSRRAEEKIKQAG 141



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 231 YFGKLGMRNFHFXK 272
           YFGK+GMR FH  K
Sbjct: 52  YFGKVGMRRFHLMK 65


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 25/63 (39%), Positives = 28/63 (44%)
 Frame = +2

Query: 77  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGILWQTWYEK 256
           M T   KTRKLRGHVS                  AGG  H R + DKYHPG   +    +
Sbjct: 1   MPTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 257 FPL 265
           F L
Sbjct: 61  FHL 63



 Score = 38.3 bits (85), Expect = 0.002
 Identities = 22/79 (27%), Positives = 39/79 (49%)
 Frame = +1

Query: 265 LXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTC 444
           L KN  + P +NLD+LWTL+  + R KY        P     QS   +V  + + P+T  
Sbjct: 63  LMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPETPV 122

Query: 445 HSKSKVLLKISREENQGCG 501
             +++ + + + E+ +  G
Sbjct: 123 IVQTRYVSRRAEEKIKQAG 141



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 231 YFGKLGMRNFHFXK 272
           YFGK+GMR FH  K
Sbjct: 52  YFGKVGMRRFHLMK 65


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +1

Query: 298 NLDKLWTLVSEQTRLKYASAPDGKVP--XHQYCQSWILQVARQRQTPQTTCHSKSKVLLK 471
           NL K W  +S     K++  P+G +P    +   SW +       TP TT  S +   LK
Sbjct: 323 NLKKQWASISPNITYKHSYNPNGTIPECPSRNKTSWAVSANAFPVTPNTTICSNAVKNLK 382

Query: 472 IS 477
            S
Sbjct: 383 CS 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,050
Number of Sequences: 5004
Number of extensions: 37445
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)