Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L21
         (932 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1250 - 25183375-25183815                                         55   9e-08
03_04_0027 + 16593133-16593573                                         54   2e-07
02_01_0563 + 4134954-4135388                                           54   2e-07

>07_03_1250 - 25183375-25183815
          Length = 146

 Score = 54.8 bits (126), Expect = 9e-08
 Identities = 26/51 (50%), Positives = 27/51 (52%)
 Frame = +2

Query: 77  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPG 229
           M TS +K RK RGHVS                 NAGG HHHRI  DKYHPG
Sbjct: 1   MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG 51



 Score = 37.1 bits (82), Expect = 0.020
 Identities = 19/77 (24%), Positives = 40/77 (51%)
 Frame = +1

Query: 271 KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTCHS 450
           +NK + P +N+++LW++V  +   + A A  GK P     Q    +V  +   P+     
Sbjct: 65  RNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEKPIVV 122

Query: 451 KSKVLLKISREENQGCG 501
           K+K++ K++ ++ +  G
Sbjct: 123 KAKLISKVAEKKIKAAG 139


>03_04_0027 + 16593133-16593573
          Length = 146

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 26/51 (50%), Positives = 26/51 (50%)
 Frame = +2

Query: 77  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPG 229
           M T  KK RK RGHVS                 NAGG HHHRI  DKYHPG
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG 51



 Score = 34.7 bits (76), Expect = 0.11
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +1

Query: 274 NKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQV-ARQRQTPQTTCHS 450
           N+  CP +N+++LW++V      K A A  GK P     Q    +V  +    PQ     
Sbjct: 66  NRFHCPAVNVERLWSMVPTD---KAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQRPIVV 122

Query: 451 KSKVLLKISREENQGCG 501
           K+K++ K++ ++ +  G
Sbjct: 123 KAKLISKVAEKKIKAAG 139


>02_01_0563 + 4134954-4135388
          Length = 144

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 26/51 (50%), Positives = 26/51 (50%)
 Frame = +2

Query: 77  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPG 229
           M T  KK RK RGHVS                 NAGG HHHRI  DKYHPG
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPG 51



 Score = 31.5 bits (68), Expect = 0.99
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +1

Query: 274 NKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQV-ARQRQTPQTTCHS 450
           N+  CP +N+++LW++V  +     A A  GK P     Q    +V  +    P+     
Sbjct: 66  NRFHCPAVNVERLWSMVPAE-----AGAGAGKAPVIDVTQFGYTKVLGKGMLPPERPIVV 120

Query: 451 KSKVLLKISREENQGCG 501
           K+K++ K++ ++ +  G
Sbjct: 121 KAKLISKVAEKKIKAAG 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,388,621
Number of Sequences: 37544
Number of extensions: 273349
Number of successful extensions: 748
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)