Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_L21
(932 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a pr... 67 1e-10
BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a ... 67 1e-10
AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A ... 67 1e-10
BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for IM... 66 2e-10
BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a ... 64 9e-10
AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a ... 58 3e-08
AB007178-1|BAA25837.1| 34|Homo sapiens ribosomal protein L27a ... 38 0.040
AL357564-3|CAI20974.1| 5183|Homo sapiens ubiquitin protein ligas... 31 6.0
AL357564-2|CAI20973.1| 1672|Homo sapiens ubiquitin protein ligas... 31 6.0
AL137127-5|CAI19272.1| 5183|Homo sapiens ubiquitin protein ligas... 31 6.0
AL137127-2|CAI19269.1| 1672|Homo sapiens ubiquitin protein ligas... 31 6.0
AF348492-1|AAL83880.1| 5183|Homo sapiens p600 protein. 31 6.0
AB037728-1|BAA92545.1| 1678|Homo sapiens KIAA1307 protein protein. 31 6.0
>U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 66.9 bits (156), Expect = 1e-10
Identities = 47/149 (31%), Positives = 61/149 (40%)
Frame = +2
Query: 77 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGILWQTWYEK 256
M + +KTRKLRGHVS NAGG HHHRIN DKYHPG + +
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 257 FPL*XRTRISVQF*T*ISFGH*SLNRRG*SMHLLQMARSPXINIVKAXXXXXXXXXXXPK 436
+ L R + + + + +P I++V++ PK
Sbjct: 61 YHL-KRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK 119
Query: 437 QPVIVXXXXXXXXXXXXXXDVGGACVLSA 523
QPVIV VGGACVL A
Sbjct: 120 QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
Score = 57.6 bits (133), Expect = 6e-08
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = +1
Query: 265 LXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTC 444
L +N++FCP +NLDKLWTLVSEQTR+ A G P +S +V + + P+
Sbjct: 63 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPV 122
Query: 445 HSKSKVLLKISREENQGCG 501
K+K + + E+ + G
Sbjct: 123 IVKAKFFSRRAEEKIKSVG 141
>BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 66.9 bits (156), Expect = 1e-10
Identities = 47/149 (31%), Positives = 61/149 (40%)
Frame = +2
Query: 77 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGILWQTWYEK 256
M + +KTRKLRGHVS NAGG HHHRIN DKYHPG + +
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 257 FPL*XRTRISVQF*T*ISFGH*SLNRRG*SMHLLQMARSPXINIVKAXXXXXXXXXXXPK 436
+ L R + + + + +P I++V++ PK
Sbjct: 61 YHL-KRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK 119
Query: 437 QPVIVXXXXXXXXXXXXXXDVGGACVLSA 523
QPVIV VGGACVL A
Sbjct: 120 QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
Score = 57.6 bits (133), Expect = 6e-08
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = +1
Query: 265 LXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTC 444
L +N++FCP +NLDKLWTLVSEQTR+ A G P +S +V + + P+
Sbjct: 63 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPV 122
Query: 445 HSKSKVLLKISREENQGCG 501
K+K + + E+ + G
Sbjct: 123 IVKAKFFSRRAEEKIKSVG 141
>AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A
protein.
Length = 148
Score = 66.9 bits (156), Expect = 1e-10
Identities = 47/149 (31%), Positives = 61/149 (40%)
Frame = +2
Query: 77 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGILWQTWYEK 256
M + +KTRKLRGHVS NAGG HHHRIN DKYHPG + +
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 257 FPL*XRTRISVQF*T*ISFGH*SLNRRG*SMHLLQMARSPXINIVKAXXXXXXXXXXXPK 436
+ L R + + + + +P I++V++ PK
Sbjct: 61 YHL-KRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK 119
Query: 437 QPVIVXXXXXXXXXXXXXXDVGGACVLSA 523
QPVIV VGGACVL A
Sbjct: 120 QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
Score = 57.6 bits (133), Expect = 6e-08
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = +1
Query: 265 LXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTC 444
L +N++FCP +NLDKLWTLVSEQTR+ A G P +S +V + + P+
Sbjct: 63 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPV 122
Query: 445 HSKSKVLLKISREENQGCG 501
K+K + + E+ + G
Sbjct: 123 IVKAKFFSRRAEEKIKSVG 141
>BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for
IMAGE:3543815) protein.
Length = 147
Score = 66.1 bits (154), Expect = 2e-10
Identities = 46/144 (31%), Positives = 59/144 (40%)
Frame = +2
Query: 92 KKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGILWQTWYEKFPL*X 271
+KTRKLRGHVS NAGG HHHRIN DKYHPG + + + L
Sbjct: 5 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHL-K 63
Query: 272 RTRISVQF*T*ISFGH*SLNRRG*SMHLLQMARSPXINIVKAXXXXXXXXXXXPKQPVIV 451
R + + + + +P I++V++ PKQPVIV
Sbjct: 64 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIV 123
Query: 452 XXXXXXXXXXXXXXDVGGACVLSA 523
VGGACVL A
Sbjct: 124 KAKFFSRRAEEKIKSVGGACVLVA 147
Score = 57.6 bits (133), Expect = 6e-08
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = +1
Query: 265 LXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTC 444
L +N++FCP +NLDKLWTLVSEQTR+ A G P +S +V + + P+
Sbjct: 62 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPV 121
Query: 445 HSKSKVLLKISREENQGCG 501
K+K + + E+ + G
Sbjct: 122 IVKAKFFSRRAEEKIKSVG 140
>BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 63.7 bits (148), Expect = 9e-10
Identities = 46/149 (30%), Positives = 60/149 (40%)
Frame = +2
Query: 77 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGILWQTWYEK 256
M + +KTRKLRGHVS NAGG HHHRIN DKYHPG + +
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 257 FPL*XRTRISVQF*T*ISFGH*SLNRRG*SMHLLQMARSPXINIVKAXXXXXXXXXXXPK 436
+ L R + + + + +P I++V++ K
Sbjct: 61 YNL-KRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLAK 119
Query: 437 QPVIVXXXXXXXXXXXXXXDVGGACVLSA 523
QPVIV VGGACVL A
Sbjct: 120 QPVIVKAKLFSRRAEEKIKSVGGACVLVA 148
Score = 55.2 bits (127), Expect = 3e-07
Identities = 28/79 (35%), Positives = 44/79 (55%)
Frame = +1
Query: 265 LXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTC 444
L +N++FCP +NLDKLWTLVSEQTR+ A G P +S +V + + +
Sbjct: 63 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLAKQPV 122
Query: 445 HSKSKVLLKISREENQGCG 501
K+K+ + + E+ + G
Sbjct: 123 IVKAKLFSRRAEEKIKSVG 141
>AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a
protein.
Length = 106
Score = 58.4 bits (135), Expect = 3e-08
Identities = 27/51 (52%), Positives = 29/51 (56%)
Frame = +2
Query: 77 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPG 229
M + +KTRKLRGHVS NAGG HHHRIN DKYHPG
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPG 51
Score = 52.4 bits (120), Expect = 2e-06
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = +1
Query: 265 LXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVP 375
L +N++FCP +NLDKLWTLVSEQTR+ A G P
Sbjct: 63 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAP 99
>AB007178-1|BAA25837.1| 34|Homo sapiens ribosomal protein L27a
protein.
Length = 34
Score = 38.3 bits (85), Expect = 0.040
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +1
Query: 295 LNLDKLWTLVSEQTRLKYASAPDGKVP 375
+NLDKLWTLVSEQTR+ A G P
Sbjct: 1 VNLDKLWTLVSEQTRVNAAKNKTGAAP 27
>AL357564-3|CAI20974.1| 5183|Homo sapiens ubiquitin protein ligase E3
component n-recognin 4 protein.
Length = 5183
Score = 31.1 bits (67), Expect = 6.0
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -3
Query: 444 TGCLGSLPLPSNL*YPALTIL-MXGDLAIWSRCILQPRLFRD*CPKLI 304
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 1272 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 1319
>AL357564-2|CAI20973.1| 1672|Homo sapiens ubiquitin protein ligase
E3 component n-recognin 4 protein.
Length = 1672
Score = 31.1 bits (67), Expect = 6.0
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -3
Query: 444 TGCLGSLPLPSNL*YPALTIL-MXGDLAIWSRCILQPRLFRD*CPKLI 304
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 488 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 535
>AL137127-5|CAI19272.1| 5183|Homo sapiens ubiquitin protein ligase E3
component n-recognin 4 protein.
Length = 5183
Score = 31.1 bits (67), Expect = 6.0
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -3
Query: 444 TGCLGSLPLPSNL*YPALTIL-MXGDLAIWSRCILQPRLFRD*CPKLI 304
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 1272 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 1319
>AL137127-2|CAI19269.1| 1672|Homo sapiens ubiquitin protein ligase
E3 component n-recognin 4 protein.
Length = 1672
Score = 31.1 bits (67), Expect = 6.0
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -3
Query: 444 TGCLGSLPLPSNL*YPALTIL-MXGDLAIWSRCILQPRLFRD*CPKLI 304
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 488 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 535
>AF348492-1|AAL83880.1| 5183|Homo sapiens p600 protein.
Length = 5183
Score = 31.1 bits (67), Expect = 6.0
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -3
Query: 444 TGCLGSLPLPSNL*YPALTIL-MXGDLAIWSRCILQPRLFRD*CPKLI 304
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 1272 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 1319
>AB037728-1|BAA92545.1| 1678|Homo sapiens KIAA1307 protein protein.
Length = 1678
Score = 31.1 bits (67), Expect = 6.0
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -3
Query: 444 TGCLGSLPLPSNL*YPALTIL-MXGDLAIWSRCILQPRLFRD*CPKLI 304
T C SLPL ++L + L+++ + GDL +WS + P++ R P L+
Sbjct: 494 TLCSQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLL 541
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,730,707
Number of Sequences: 237096
Number of extensions: 1503333
Number of successful extensions: 3058
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3038
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12214492840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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