Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L21
         (932 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...    62   6e-10
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    38   0.008
Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   8.3  
AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical...    28   8.3  
AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical...    28   8.3  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score = 62.1 bits (144), Expect = 6e-10
 Identities = 30/63 (47%), Positives = 34/63 (53%)
 Frame = +2

Query: 77  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGILWQTWYEK 256
           MA + +KTRKLRGHVS                 NAGG+HHHRIN DKYHPG   +     
Sbjct: 1   MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 257 FPL 265
           F L
Sbjct: 61  FHL 63



 Score = 38.3 bits (85), Expect = 0.008
 Identities = 20/65 (30%), Positives = 36/65 (55%)
 Frame = +1

Query: 265 LXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTC 444
           L KN+++CP +N+++LW+LV ++ R K   A  GK P     +    +V  +   P+T  
Sbjct: 63  LNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPETPL 119

Query: 445 HSKSK 459
             K++
Sbjct: 120 IVKAR 124



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 231 YFGKLGMRNFHFXKEQEF 284
           YFGK+GMR FH  K Q +
Sbjct: 52  YFGKVGMRVFHLNKNQHY 69


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 20/65 (30%), Positives = 36/65 (55%)
 Frame = +1

Query: 265 LXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPXHQYCQSWILQVARQRQTPQTTC 444
           L KN+++CP +N+++LW+LV ++ R K   A  GK P     +    +V  +   P+T  
Sbjct: 6   LNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPETPL 62

Query: 445 HSKSK 459
             K++
Sbjct: 63  IVKAR 67


>Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17b protein.
          Length = 1467

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 394 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 498
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17a protein.
          Length = 1538

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 394 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 498
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 183 PALPRPPGCLRCFPIRPCP 127
           PA P+ P C  C P +PCP
Sbjct: 50  PACPQAPSCPVCPPPQPCP 68


>AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17b protein.
          Length = 1467

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 394 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 498
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


>AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17a protein.
          Length = 1538

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 394 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 498
           SW+ +++   Q P+T C      ++K+ REE   C
Sbjct: 5   SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,435,197
Number of Sequences: 27780
Number of extensions: 227942
Number of successful extensions: 514
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)