Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L19
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    38   0.001
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    28   1.5  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    27   4.6  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   6.1  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    26   6.1  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   8.0  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    26   8.0  

>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 32/139 (23%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
 Frame = +3

Query: 279 SLEEIVPLMAEFYPERMSVQWISDT----TYIYKDPGGIKKYDA-STDKVVTILNEIELY 443
           SL++IV  + ++ P    V WI       T++ K    I   D  + +K +  ++++   
Sbjct: 56  SLDDIV--LQKYKPSYKQVNWIDSQGLKDTFLVKYGDLINIQDPYNLNKTLFSVSDLVYN 113

Query: 444 NLS-NYTLSTFSEDGKYVLLTKNRRKIYRYSFLAEYSVLDIEKRLIYKLSD----YPLQV 608
            +  +Y   + S D KYVL++ N+ + +R+S  A+Y + + E + +  L      + + +
Sbjct: 114 GIQLDYDSYSISFDAKYVLVSVNKSQRWRHSSFAQYYLYNTETKDVNMLGQDNEHWTISL 173

Query: 609 VVWG-IGKSVAYVQDNNVY 662
             W   G  +++V +N++Y
Sbjct: 174 AEWSPTGHQLSFVYNNDLY 192


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 425 ENRDDFIRGCVVFLYPT 375
           E+RD+ IR C+VFL PT
Sbjct: 264 EHRDNSIRRCIVFLLPT 280


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +3

Query: 393 DASTDKVVTILNEIELYNLSNYTLSTFSEDGKY---VLLTKNRRKIYRYSFLAEYSVLDI 563
           D+   K + +LN++ L +    TL  FSE  KY     + K +   YR+S     S LD+
Sbjct: 447 DSYNVKKIRLLNDLNLGSREGLTLREFSE--KYPDEFDVIKRKDYAYRFSGQGGESYLDV 504

Query: 564 EKRL 575
             RL
Sbjct: 505 IHRL 508


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 435 ELYNLSNYTLSTFSEDGKYVLLTKNRRKIYRYSFLAEYSVLDIEKRLIYKLSD 593
           ELYN     L++  + G+Y  L K+   +       +Y++   EK  + KLS+
Sbjct: 656 ELYNAFKLQLTSLKQKGEYATLAKDAEAVQHIIEERDYAL--AEKADLLKLSE 706


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 504 KNRRKIYRYSFLAEYSVLDIEKRLIYKLSDYPLQ 605
           K+  K+Y  +    Y V  +  R+ Y L DYP Q
Sbjct: 269 KSSNKLYMKTSFTTYEVAVVYYRVGYALDDYPSQ 302


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 390 YDASTDKV--VTILNEIELYNLSNYTLSTFSEDGKYVLLTKNRRKIYRYSFLAEYSVLDI 563
           Y A+++ +   T+ +    Y L      T    G+Y  L  NRRK  + + L  YS+L +
Sbjct: 314 YTATSESINIKTLSSTTPEYILLKKLSETIVALGQYNYLDSNRRKCIKLTSLDTYSLLVL 373

Query: 564 E 566
           E
Sbjct: 374 E 374


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -2

Query: 402 WMRRISLSHQDLCIYTLYLISIALTFFQDKTRPSKVL 292
           WM R S SH   C     L    LTF   + +P + L
Sbjct: 21  WMNRHSYSHHAKCTVAQLLKQNLLTFENQRIQPEEEL 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,494,025
Number of Sequences: 5004
Number of extensions: 74033
Number of successful extensions: 204
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)