Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_L19
(871 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1537 + 27562097-27562340,27562436-27562494,27562605-275626... 30 2.8
09_03_0001 - 11373469-11373862,11374072-11374264,11374414-113744... 29 4.8
07_01_0670 + 5030971-5032698 29 4.8
02_04_0027 - 19014033-19014127,19014219-19014315,19014560-190146... 29 4.8
04_03_0588 + 17595299-17596151,17597519-17597665,17598562-175988... 29 6.4
12_01_1109 - 11726818-11727719,11728225-11728394,11730407-117304... 28 8.5
06_03_0176 - 17575155-17575761,17575935-17575972 28 8.5
06_02_0185 + 12774608-12775970,12776058-12776983 28 8.5
>07_03_1537 +
27562097-27562340,27562436-27562494,27562605-27562680,
27562776-27562847,27562934-27563021,27563118-27563361,
27563490-27563605,27563783-27564000,27564113-27564144,
27564262-27564364,27564471-27564751
Length = 510
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/77 (23%), Positives = 37/77 (48%)
Frame = +3
Query: 420 ILNEIELYNLSNYTLSTFSEDGKYVLLTKNRRKIYRYSFLAEYSVLDIEKRLIYKLSDYP 599
+ + I+ +++YT + G + L + + + F E + + I + + Y
Sbjct: 333 VKDSIDYVGINHYTSFYMKDPGPWNLTPTSYQDDWHVGFAYERNGVPIGAQA----NSYW 388
Query: 600 LQVVVWGIGKSVAYVQD 650
L +V WGI K+V YV++
Sbjct: 389 LYIVPWGINKAVTYVKE 405
>09_03_0001 -
11373469-11373862,11374072-11374264,11374414-11374482,
11374858-11374984,11375223-11375485,11375697-11375785,
11375832-11375909,11376070-11376141,11376234-11376372,
11378857-11379323,11380781-11381345,11382553-11382622
Length = 841
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 534 FLAEYSVLDIEKRLIYKLSDYPLQVVVWGIGKSVAYVQDNNVYYVPD 674
FLA ++VL + ++ +S + G+ + +Y DN + YVPD
Sbjct: 3 FLAFFAVLVLATAVVPAVSQQGYLSIDCGLEANSSYQDDNRILYVPD 49
>07_01_0670 + 5030971-5032698
Length = 575
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 480 DGKYVLLTKNRRKIYRYSFLAEYSVLDIEKRLIYKLSDYP 599
+G+ VL + RR++Y + ++EY+ EK Y D+P
Sbjct: 196 EGREVLFSSRRRRLYTNNKMSEYASYSDEKAWSYVDFDHP 235
>02_04_0027 -
19014033-19014127,19014219-19014315,19014560-19014673,
19014759-19014923,19015169-19015306,19015402-19015478,
19015572-19015686,19015756-19015861,19016182-19016243,
19016407-19016472,19016628-19016810,19017359-19017415,
19017848-19017896,19017983-19018131,19019203-19019250,
19020061-19020201
Length = 553
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 498 LTKNRRKIYRYSFLAEYSVLDIEKRL--IYKLSDYPLQVVVWGIG 626
L N++K + + + V D ++ + I K SD+PL ++V G+G
Sbjct: 438 LANNQQKYFVLLIVTDGVVTDFQETIDAIIKASDFPLSILVVGVG 482
>04_03_0588 +
17595299-17596151,17597519-17597665,17598562-17598837,
17599108-17599805
Length = 657
Score = 28.7 bits (61), Expect = 6.4
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +3
Query: 270 KIFSLEEIVPLMAEFYPERMSVQWISDTTYIYKDPGGIKKYDASTDKVVTILNEIELYNL 449
KIFSLEE+ F P R V +YK+ G Y S V + +++ N+
Sbjct: 395 KIFSLEELKEATNNFDPTR--VLGSGGHGMVYKEAAGALYYLHSAASVSVLHRDVKSSNI 452
Query: 450 ---SNYTLSTFSEDGKYVLLTKNRRKIY 524
SNYT + S+ G L+ ++ ++
Sbjct: 453 LLDSNYT-AKVSDFGASRLIPNDQTHVF 479
>12_01_1109 -
11726818-11727719,11728225-11728394,11730407-11730483,
11730559-11730645,11730730-11730816,11731887-11731991,
11732133-11732168,11733636-11733754,11733862-11734067,
11735854-11735906,11735986-11736153,11736507-11736591,
11737845-11738023,11738939-11739070,11739209-11739295,
11739920-11739972,11740820-11740892,11741791-11742442,
11743165-11743229
Length = 1111
Score = 28.3 bits (60), Expect = 8.5
Identities = 27/86 (31%), Positives = 44/86 (51%)
Frame = +3
Query: 402 TDKVVTILNEIELYNLSNYTLSTFSEDGKYVLLTKNRRKIYRYSFLAEYSVLDIEKRLIY 581
TD+ + I NEI + + S EDGKY+ + + + R L E + + L
Sbjct: 562 TDECIAIGNEILSWKQKGLSESEGCEDGKYIWSLRLKATLDRARRLTE----EYSEAL-- 615
Query: 582 KLSDYPLQVVVWGIGKSVAYVQDNNV 659
LS +P +V+V IGK++ + DN+V
Sbjct: 616 -LSIFPEKVMV--IGKALG-IPDNSV 637
>06_03_0176 - 17575155-17575761,17575935-17575972
Length = 214
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = -1
Query: 163 EARRRSSMKVKWSNQHHTTEFGGLSSRNVHTVSRAVGDSKS*GFPI 26
E RR + ++++ + + E GL ++ ++ VGD + GFP+
Sbjct: 132 ERRRAAPGRIQYGRRRLSGELVGLPQQDARVRAQGVGDQTTHGFPL 177
>06_02_0185 + 12774608-12775970,12776058-12776983
Length = 762
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 127 TTLLSLRIAFLLPVFRTTN*EYGNGASCLSAHGFDMPHAIVGIYSG 264
T + S + F + +FRT + G G + + A G D P G YSG
Sbjct: 114 TYVASFNMVFRVNIFRTNTSDPGEGVAFVVASGLDPPPP--GSYSG 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,198,718
Number of Sequences: 37544
Number of extensions: 460177
Number of successful extensions: 952
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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