Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L19
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.7  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   8.5  

>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
 Frame = +3

Query: 501 TKNRRKIYRYSFLAEYSV------LDIEKRLIYKLSDYPLQVVVWGIGKSVAYVQDNNVY 662
           TK   K   Y   A YS        ++E +LIY + D  L    + + ++  +   +  Y
Sbjct: 190 TKTSGKYKEYIIPANYSGWYLNHDYNLENKLIYFIEDIGLNTYYFFLRQAFPFWLPSKEY 249

Query: 663 YVPDITQADYV 695
            +PD    +Y+
Sbjct: 250 DLPDYRGEEYL 260


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 665 VVYIVILDVSYRFPNT 618
           V+ IVIL+V YR P+T
Sbjct: 314 VITIVILNVHYRKPST 329


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 73  CARYETTVRRTRSCDVD 123
           C  +ETT      CDVD
Sbjct: 47  CGIHETTYNSIMKCDVD 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,128
Number of Sequences: 438
Number of extensions: 5428
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)