Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L18
         (970 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   0.48 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   2.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.3  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    23   5.1  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.6 bits (51), Expect(2) = 0.48
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 483 PPPPPPXPXXXPP 445
           P PPPP P   PP
Sbjct: 236 PAPPPPPPPTLPP 248



 Score = 23.8 bits (49), Expect(2) = 0.48
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 492 FXXPPPPPPXP 460
           +  PPPPPP P
Sbjct: 187 YNPPPPPPPPP 197


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.4 bits (48), Expect(2) = 2.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 483 PPPPPPXP 460
           PPPPPP P
Sbjct: 946 PPPPPPPP 953



 Score = 22.6 bits (46), Expect(2) = 2.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 492 FXXPPPPPP 466
           F  PPPPPP
Sbjct: 944 FPPPPPPPP 952


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 483 PPPPPPXPXXXPP 445
           PPPPPP P   PP
Sbjct: 9   PPPPPPPPGFEPP 21


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 23.4 bits (48), Expect(2) = 5.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 484 PPPPPPXXXXXSP 446
           PPPPPP     SP
Sbjct: 372 PPPPPPELLNHSP 384



 Score = 21.4 bits (43), Expect(2) = 5.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 493 FXXPPPPPP 467
           +  PPPPPP
Sbjct: 368 YSPPPPPPP 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.147    0.468 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,130,867
Number of Sequences: 5004
Number of extensions: 12463
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)