Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L18
         (970 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical ...    30   2.8  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    25   3.3  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    25   3.4  
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    29   6.6  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    29   6.6  
AL117204-23|CAB55137.1|  285|Caenorhabditis elegans Hypothetical...    28   8.7  

>AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical
           protein Y66H1A.4 protein.
          Length = 244

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 446 GGXXXGXGGGGGGXXKXKKKKKXXGGXRG 532
           GG   G GGGGGG  +  +     GG RG
Sbjct: 11  GGFRGGRGGGGGGGFRGGRGGDRGGGFRG 39


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 25.0 bits (52), Expect(2) = 3.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 483 PPPPPPXPXXXP 448
           PPPPPP P   P
Sbjct: 631 PPPPPPPPMGLP 642



 Score = 23.0 bits (47), Expect(2) = 3.3
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 531 PLXPPXXFFFFFXFXXPPPPPPXP 460
           P  PP  F         PPPPP P
Sbjct: 613 PPPPPQSFGMAPISSAAPPPPPPP 636


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 25.0 bits (52), Expect(2) = 3.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 483 PPPPPPXPXXXP 448
           PPPPPP P   P
Sbjct: 457 PPPPPPPPMGLP 468



 Score = 23.0 bits (47), Expect(2) = 3.4
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 531 PLXPPXXFFFFFXFXXPPPPPPXP 460
           P  PP  F         PPPPP P
Sbjct: 439 PPPPPQSFGMAPISSAAPPPPPPP 462


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = -3

Query: 311 FFFFXXPPPXXXXFPPPLXFFLFXXPXFPXXKXPPPP 201
           F FF  PPP    FPPP   F+      P    PPPP
Sbjct: 293 FGFF--PPPPRGHFPPPPPHFM--GRGMPPPFMPPPP 325


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = -3

Query: 311 FFFFXXPPPXXXXFPPPLXFFLFXXPXFPXXKXPPPP 201
           F FF  PPP    FPPP   F+      P    PPPP
Sbjct: 293 FGFF--PPPPRGHFPPPPPHFM--GRGMPPPFMPPPP 325


>AL117204-23|CAB55137.1|  285|Caenorhabditis elegans Hypothetical
           protein Y116A8C.35 protein.
          Length = 285

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/51 (31%), Positives = 18/51 (35%)
 Frame = +2

Query: 449 GXXXGXGGGGGGXXKXKKKKKXXGGXRGXXXXXXXXXXXXXKGXGXEXRGR 601
           G   G GGGGGG  + +      GG RG              G G   R R
Sbjct: 228 GSGGGWGGGGGGRDRDRGGWGGGGGGRGYGGGGGGGGYGYGGGGGGRRRSR 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.147    0.468 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,457,394
Number of Sequences: 27780
Number of extensions: 135192
Number of successful extensions: 2492
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2510937120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)