Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L17
         (951 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    47   4e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    38   0.002
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    33   0.045
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    31   0.24 
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    30   0.55 
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    27   3.9  

>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 31/108 (28%), Positives = 49/108 (45%)
 Frame = +2

Query: 194 YGGDEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVGVGPATHIPNXEEKVPDGNITXTG 373
           YGGDE+ A++ DPG    R+G + ED PK  +P+  G            +  DG      
Sbjct: 6   YGGDEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG------------EFSDG------ 47

Query: 374 SKAGSELRHYIDVTELHVPRPGMEVQTYMKDGXVDNWDLFEKMLXYML 517
                  R       ++   PGME++  +++G V+NWD+   +  Y L
Sbjct: 48  -------RRLFGEEYIYKSNPGMEIKNAIRNGWVENWDVTVDLWRYGL 88


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 26/95 (27%), Positives = 43/95 (45%)
 Frame = +2

Query: 203 DEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVGVGPATHIPNXEEKVPDGNITXTGSKA 382
           +EI +L+ DPG    R G A E++P   +P+  GV                    TG   
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGV----------------RSDVTGRN- 50

Query: 383 GSELRHYIDVTELHVPRPGMEVQTYMKDGXVDNWD 487
               ++ +D  ++H P PGMEV+    +G + +W+
Sbjct: 51  ----KYVVDELQIHAPIPGMEVKNGKSNGIIQDWE 81



 Score = 32.7 bits (71), Expect = 0.078
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 577 WATRXVREKXADLIFXKYQXPAFFLVXNAXLXAFANGK 690
           W  + VR++  +  F +   PAF+L   A   AFAN K
Sbjct: 111 WNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSK 148


>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 33.5 bits (73), Expect = 0.045
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 203 DEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVG 304
           +EI AL+ D G    + G A +D P+A  P++VG
Sbjct: 3   EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVG 36



 Score = 31.1 bits (67), Expect = 0.24
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 595 REKXADLIFXKYQXPAFFLVXNAXLXAFANGK 690
           REK   +IF  +  PAF++   A L  +A+G+
Sbjct: 116 REKMTQIIFETFNAPAFYVAIQAVLSLYASGR 147


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 22/99 (22%), Positives = 44/99 (44%)
 Frame = +2

Query: 206 EIGALLFDPGHHSLRVGXAQEDTPKADIPAVVGVGPATHIPNXEEKVPDGNITXTGSKAG 385
           E   ++ D G   ++VG A+++ P+   P++VG      I   EEK   GN+       G
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVG----RPILRAEEKT--GNVQIKDVMVG 55

Query: 386 SELRHYIDVTELHVPRPGMEVQTYMKDGXVDNWDLFEKM 502
            E      + ++  P     ++ + +   + ++  FEK+
Sbjct: 56  DEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKL 94


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
 Frame = +2

Query: 287 IPAVVGVGPATHIPNXEEKVPDGNITXTGSKAGSELRHYIDVTELHVPRPGMEVQTYMKD 466
           +P+ +G   A         V DG+   TG +    +RH + V    +   G  ++  + D
Sbjct: 425 VPSAMGYAVAAPERRTIVMVGDGSFQLTGQEISQMIRHKLPVLIFLLNNRGYTIEIQIHD 484

Query: 467 G---XVDNWD 487
           G    + NWD
Sbjct: 485 GPYNRIQNWD 494


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 275 PKADIPAVVGVGPATHIPNXEEKVPD 352
           PKAD+  +V VG +T IP  +  V D
Sbjct: 329 PKADVHDIVLVGGSTRIPKVQRLVSD 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,164,523
Number of Sequences: 5004
Number of extensions: 55298
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)