Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L17
         (951 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.           34   0.007
U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.          33   0.017
U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.          33   0.017
U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.          33   0.017
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            27   0.63 
AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA methy...    26   1.5  
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    25   3.4  
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          24   7.8  

>CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.
          Length = 376

 Score = 33.9 bits (74), Expect = 0.007
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 203 DEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVG 304
           D+ GAL+ D G    + G A +D P+A  P++VG
Sbjct: 4   DDAGALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37


>U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 32.7 bits (71), Expect = 0.017
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 203 DEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVG 304
           +E+ AL+ D G    + G A +D P+A  P++VG
Sbjct: 4   EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37


>U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 32.7 bits (71), Expect = 0.017
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 203 DEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVG 304
           +E+ AL+ D G    + G A +D P+A  P++VG
Sbjct: 4   EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37


>U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 32.7 bits (71), Expect = 0.017
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 203 DEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVG 304
           +E+ AL+ D G    + G A +D P+A  P++VG
Sbjct: 4   EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 27.5 bits (58), Expect = 0.63
 Identities = 17/64 (26%), Positives = 23/64 (35%)
 Frame = +1

Query: 289 TSSCGRRASYTHPKXRRKGS*WQHHSXRQ*SGQRAATLHRRHRAPRPASGYGSADVHERR 468
           TSS GR      P    +     HH   Q   Q+   LH  H     A   G +   E+ 
Sbjct: 122 TSSGGRPGQSGSPPDPTRNGIVLHHQAHQQQQQQQQQLHHHHHHHHNAPAGGESSTSEKD 181

Query: 469 TXRQ 480
           + R+
Sbjct: 182 SSRE 185


>AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA
           methylase protein.
          Length = 459

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 310 PDAHNCWYISFWGI 269
           PD H  WYI FWG+
Sbjct: 147 PDVHY-WYIEFWGL 159


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 385 QRAATLHRRHRAPRPASG 438
           Q A+T H R+  PRPA+G
Sbjct: 118 QTASTPHNRNSDPRPATG 135


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 295 SCGRRASYTHPKXRRKGS*WQHHSXRQ*SGQRAATLHRRHRAPRPASGYGSADVHER 465
           S  R  S +  + R +GS  +  + +  S  +  T   R R P PA G+  A +  R
Sbjct: 419 SRSRSLSRSVSRSRSRGSRSRSRTSQSRSRSKTRTSRSRSRTPLPARGHVRARLTRR 475


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 844,474
Number of Sequences: 2352
Number of extensions: 15373
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 104189652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)