Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_L17
(951 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 84 2e-16
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 34 0.13
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 34 0.13
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 34 0.13
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 34 0.13
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 34 0.13
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 34 0.13
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 34 0.13
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 34 0.17
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 33 0.30
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 33 0.30
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 33 0.30
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 33 0.30
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 30 2.1
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 30 2.1
U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of... 29 4.9
J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein ( C.ele... 29 4.9
Z70781-3|CAA94833.2| 352|Caenorhabditis elegans Hypothetical pr... 28 8.5
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 83.8 bits (198), Expect = 2e-16
Identities = 41/112 (36%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Frame = +2
Query: 182 NGMLYGGDEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVGVGPATHIPNXE--EKVPDG 355
+G +YGGDE+ L+FD G S RVG A E+ PK DIP+ + V A E E + +G
Sbjct: 2 SGAVYGGDEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYIAVQEALPDDTIEKQEAMEEG 61
Query: 356 NITXTGSKAGSELRHYIDVTELHVPRPGMEVQTYMKDGXVDNWDLFEKMLXY 511
+ + +K E +I T++ VPR ++++MK+G +++W+LFEK++ +
Sbjct: 62 DNSKVQTK--REKNFFIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEH 111
Score = 41.5 bits (93), Expect = 9e-04
Identities = 22/67 (32%), Positives = 35/67 (52%)
Frame = +1
Query: 529 SAPHQXTIPYSSLRAVWATRXVREKXADLIFXKYQXPAFFLVXNAXLXAFANGKIYSTGQ 708
S P + + +S + W R REK +++F K+Q PA++L N L FA G+ +
Sbjct: 119 SNPSEHPVLFSE--SSWNDRARREKLTEIMFEKFQVPAYYLSKNVVLSCFAQGRTHGL-M 175
Query: 709 XXAGAAQ 729
+GA Q
Sbjct: 176 VDSGATQ 182
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 34.3 bits (75), Expect = 0.13
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 203 DEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVG 304
DE+ AL+ D G + G A +D P+A P++VG
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 34.3 bits (75), Expect = 0.13
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 203 DEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVG 304
DE+ AL+ D G + G A +D P+A P++VG
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 34.3 bits (75), Expect = 0.13
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 203 DEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVG 304
DE+ AL+ D G + G A +D P+A P++VG
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 34.3 bits (75), Expect = 0.13
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 203 DEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVG 304
DE+ AL+ D G + G A +D P+A P++VG
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 34.3 bits (75), Expect = 0.13
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 203 DEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVG 304
DE+ AL+ D G + G A +D P+A P++VG
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 34.3 bits (75), Expect = 0.13
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 203 DEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVG 304
DE+ AL+ D G + G A +D P+A P++VG
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 34.3 bits (75), Expect = 0.13
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 203 DEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVG 304
DE+ AL+ D G + G A +D P+A P++VG
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 34.3 bits (75), Expect = 0.13
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 203 DEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVG 304
DE+ AL+ D G + G A +D P+A P++VG
Sbjct: 4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 33.9 bits (74), Expect = 0.17
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 203 DEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVG 304
D++ AL+ D G + G A +D P+A P++VG
Sbjct: 4 DDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 33.1 bits (72), Expect = 0.30
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 203 DEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVG 304
+EI AL+ D G + G A +D P+A P++VG
Sbjct: 3 EEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 36
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 33.1 bits (72), Expect = 0.30
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 203 DEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVG 304
D++ AL+ D G + G A +D P+A P++VG
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 33.1 bits (72), Expect = 0.30
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 203 DEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVG 304
D++ AL+ D G + G A +D P+A P++VG
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 33.1 bits (72), Expect = 0.30
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 203 DEIGALLFDPGHHSLRVGXAQEDTPKADIPAVVG 304
D++ AL+ D G + G A +D P+A P++VG
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 37
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 320 HIPNXEEKVPDGNITXTGSK---AGSELRHYIDVTELHVPRPGMEVQTYMKDGXV 475
++ +E V G+ G+K A +LR++ +LH+ +PG V+ +MKDG +
Sbjct: 392 NVDKLQELVNRGDTQYPGAKENGARVDLRYHPRAADLHL-QPGYRVERHMKDGDI 445
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 320 HIPNXEEKVPDGNITXTGSK---AGSELRHYIDVTELHVPRPGMEVQTYMKDGXV 475
++ +E V G+ G+K A +LR++ +LH+ +PG V+ +MKDG +
Sbjct: 392 NVDKLQELVNRGDTQYPGAKENGARVDLRYHPRAADLHL-QPGYRVERHMKDGDI 445
>U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 1, isoform a protein.
Length = 656
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +2
Query: 263 QEDTPKADIPAVVGVGPATHIP----NXEEKVPDGNITXTGSKAGSELRHYIDV 412
+E PKAD+ ++ V HIP EE++PD N G + L +++
Sbjct: 494 EEKEPKADVRRLMIVCHELHIPLLHHTLEERIPDSNSAELGLPKAAVLEQLLEL 547
>J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein (
C.elegans fem-1 gene,complete cds. ).
Length = 656
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +2
Query: 263 QEDTPKADIPAVVGVGPATHIP----NXEEKVPDGNITXTGSKAGSELRHYIDV 412
+E PKAD+ ++ V HIP EE++PD N G + L +++
Sbjct: 494 EEKEPKADVRRLMIVCHELHIPLLHHTLEERIPDSNSAELGLPKAAVLEQLLEL 547
>Z70781-3|CAA94833.2| 352|Caenorhabditis elegans Hypothetical
protein F57A8.5 protein.
Length = 352
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 216 HYSLILVIIRCELVMHKRIPQKLIYQQLWASGQLHTSQXPKK 341
HY +L C++ + QKL+Y W++ TS P K
Sbjct: 29 HYG-VLSCYACKMFFRRMSVQKLVYNCKWSNNCFETSPYPLK 69
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,193,964
Number of Sequences: 27780
Number of extensions: 350071
Number of successful extensions: 642
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2465154230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -