Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L16
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    27   4.7  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    26   6.2  

>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 715 KAPRFPEGRKADRYPVSGRVGTGERTRELXRGKRLVSL 602
           +AP+F E  + D Y V G V +   TRE   G +   L
Sbjct: 192 RAPKF-EAPEVDNYVVMGIVASNSGTRETVNGNKYCML 228


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 760 NDLHPN*DTYSVSYEKAPRFPEGRKADRYPVSGRVGTGERT 638
           N  HP   T + S  +  R   GR+ DR+  +GRV T + T
Sbjct: 97  NAAHPVDATGAPSNRRNARARRGREFDRHSQTGRVDTKKAT 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,253,426
Number of Sequences: 5004
Number of extensions: 62895
Number of successful extensions: 157
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)