Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L16
         (882 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           33   0.30 
07_01_1201 - 11419851-11419913,11420090-11420311                       31   1.2  
12_02_1188 + 26801833-26802225                                         30   2.8  
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482...    29   4.9  
06_01_0438 + 3110703-3111945,3112486-3113057                           29   6.5  
03_05_0019 + 19862171-19863049                                         29   6.5  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.6  
03_06_0149 - 31987183-31987630,31987813-31987874                       28   8.6  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 698 RREKGGQVSGKRQGRNRRAHEGAXQGETPG 609
           RR  GG+V+G+   R+RR   GA +GE  G
Sbjct: 245 RRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 533 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRIP 679
           L PP          Q+WR+  PTG   + +FP G LP A     PA  R P
Sbjct: 13  LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 686 GGQVSGKRQGRNRRAHEGAXQGETPGIFIVLSG 588
           GG  SGKR      AHEG  +G  P +++V  G
Sbjct: 33  GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64


>03_01_0658 +
           4818401-4818540,4818605-4819201,4819694-4819949,
           4820038-4820723,4821009-4821147,4821378-4821514,
           4821805-4822077,4822175-4822382,4822660-4822731,
           4823230-4823460,4824269-4824532,4825127-4825268,
           4825355-4825467
          Length = 1085

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 629 KLPRALSCSDPAAY--RIPVRLSPFGKAWRF 715
           K PRA  C  P+A    + + LSP+ K WRF
Sbjct: 11  KRPRADDCESPSAVFKYVCIALSPWPKLWRF 41


>06_01_0438 + 3110703-3111945,3112486-3113057
          Length = 604

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 147 HCILVVVCPNSSMYLIMSGSN*PSSKGRSAAAVP 46
           HC + +VC +S+  L++S    P+    ++AA+P
Sbjct: 64  HCFVEIVCADSAGRLLLSAKPRPAPAATTSAALP 97


>03_05_0019 + 19862171-19863049
          Length = 292

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = +1

Query: 604 KIPGVSPWXAPSCALLFRPCRLPDTCPPFSLRESVALSHSSRCRYLSSGVGRSLQAGLCA 783
           K P V     P+ A   RP  LP   PP   R S       +C+Y  + + +S +   C 
Sbjct: 202 KRPQVVQMRRPAPAKQQRPTILPP--PPVVKRPSPT---RGKCQYCGAAISKSFRCMSCH 256

Query: 784 RTPRSARP 807
           R+P   +P
Sbjct: 257 RSPMDNKP 264


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 293 NESAN---ARGEAVCVLGALPLPRSLTRCAR 376
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 704 LSRREKGGQVSGKRQGRNRRAHEGAXQGETP 612
           L R ++ G +  +R+GR R AHEG   G  P
Sbjct: 83  LERLQEAG-IEAERRGRRRNAHEGIKIGAEP 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,732,770
Number of Sequences: 37544
Number of extensions: 519305
Number of successful extensions: 1501
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)