Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L13
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.9  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   6.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 34/167 (20%), Positives = 42/167 (25%), Gaps = 2/167 (1%)
 Frame = +3

Query: 438 PXXXXPPTXPLPPXVRXRXXVSPPPKXEXRXXXKXGXXPG--KXXXPKGHQXAXXRKXAA 611
           P    P   P+PP       VS PP    R        P       P     +     AA
Sbjct: 246 PSLSAPAPPPIPPP--SNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAA 303

Query: 612 WXAXSXRPXPPEXXXXKSTPXXXGGXPPXGTXKXPGRSXXXXXXXXXXXXXXXXXRXXPE 791
             A   RP PP     ++      G PP G                              
Sbjct: 304 LAANKKRPPPPPPPSRRNR-----GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGR 358

Query: 792 NXVPPXPPXPGKXXGPFPXNPTXXXGYLHPPGXXARPXPKPGPXXPP 932
           +  PP PP      G  P   +      +PP        +  P  PP
Sbjct: 359 SAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
 Frame = +3

Query: 810  PPXPGKXXGPFPXNPTXXXGYLH-PPGXXARPXPKPGPXXPPHP 938
            PP P    G  P  P    G    PP   A P PKP    PP P
Sbjct: 1169 PPVPAPSSG-IPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/43 (30%), Positives = 15/43 (34%)
 Frame = +3

Query: 810  PPXPGKXXGPFPXNPTXXXGYLHPPGXXARPXPKPGPXXPPHP 938
            PP P     P    P+     +  P     P PKP    PP P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP 1192


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
 Frame = +3

Query: 786 PENXVPPXPPXPGKXXGPFPXNPTXXXGYLHPPGXXARPXPKPG-PXXPPHP 938
           P   +PP P  PG         P    G   PPG    P P PG P  P  P
Sbjct: 501 PGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPG---MPAPFPGYPAVPAMP 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.140    0.474 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,794
Number of Sequences: 5004
Number of extensions: 18765
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)