Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L12
         (998 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    59   2e-07
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    53   1e-05
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    40   0.076
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    38   0.53 
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    36   1.2  
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    34   6.6  

>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 58.8 bits (136), Expect = 2e-07
 Identities = 28/42 (66%), Positives = 28/42 (66%)
 Frame = -2

Query: 571 PFAGLLLTCSFLRYPLIXWXTVFPPLSELIPLAXAXRPSXAS 446
           P    LLTCSF  YPLI W TV PPLSEL PLA   RPS AS
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERPSVAS 60


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 52.8 bits (121), Expect = 1e-05
 Identities = 28/38 (73%), Positives = 28/38 (73%)
 Frame = +1

Query: 436 SLTDSRXSVVRLXRXESAHSKXGIRXSXXSGDNAGKNM 549
           SLTDS  SVVRL R  SAHSK  IR S  SGDNAGKNM
Sbjct: 22  SLTDSLRSVVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 40.3 bits (90), Expect = 0.076
 Identities = 17/24 (70%), Positives = 17/24 (70%)
 Frame = +3

Query: 372 AXMNRPTRGXRXFAYWXXXRXLAH 443
           A MNRPTRG R FAYW   R LAH
Sbjct: 26  ALMNRPTRGERRFAYWALFRFLAH 49


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 37.5 bits (83), Expect = 0.53
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = +3

Query: 624 P*RSITKXDAQVKGGETRKXYKXT 695
           P  SITK DAQV+GGETR+ YK T
Sbjct: 22  PLTSITKIDAQVRGGETRQDYKDT 45


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 36.3 bits (80), Expect = 1.2
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = +3

Query: 624 P*RSITKXDAQVKGGETRKXYKXT 695
           P  SITK DAQ+ GGETR+ YK T
Sbjct: 58  PLTSITKSDAQISGGETRQDYKDT 81


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 33.9 bits (74), Expect = 6.6
 Identities = 16/24 (66%), Positives = 17/24 (70%)
 Frame = -3

Query: 441 ERXXGXAPNTQTXXPRALADSXMQ 370
           +R    APNTQT  PRALADS MQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 480,982,831
Number of Sequences: 1657284
Number of extensions: 5784184
Number of successful extensions: 6568
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6562
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 94306056537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)