Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L11
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.0  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -2

Query: 191 PHYHYLPHNPLSFEIIPYHYH 129
           PH+H + H        P+H+H
Sbjct: 414 PHHHTMGHGHSHIHATPHHHH 434



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 188 HYHYLPHNPLSFEIIPYHYH 129
           H H  PH+  S    P+H H
Sbjct: 425 HIHATPHHHHSHAATPHHQH 444


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +2

Query: 158 IMDCEADSDSEADIIWL 208
           +++C+A  + + DIIW+
Sbjct: 22  VVECQARGNPQPDIIWV 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,531
Number of Sequences: 438
Number of extensions: 4632
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)