Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L08
         (949 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       30   0.035

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.9 bits (64), Expect = 0.035
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +2

Query: 776 PPPXGPPXXTPTSPPX--PPXPXEGPPXPXPP 865
           P P   P  +P +P    PP P +GPP   PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 29.5 bits (63), Expect = 0.047
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 698 PXPRXPXXPXXEPXKKTTPXPXPLXEPPPXGPPXXTPTSPP 820
           P P+       +  ++ +P P P   PPP GPP   P+  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSP-PNPSQGPPPGGPPGAPPSQNP 60



 Score = 28.3 bits (60), Expect = 0.11
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +2

Query: 752 PXPXPLXEPPPXGPPXXTPTSPPXPPXPXEGPPXPXP 862
           P P P     P  P   +P +P   P P  GPP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPG-GPPGAPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.138    0.459 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,411
Number of Sequences: 438
Number of extensions: 4091
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)