Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L06
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    26   6.5  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   8.6  

>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +2

Query: 329 DWQFYRDFSIFNTRWIDFILIYSLQIACKEIVLRENLFILFEIEQIHL 472
           +W +  D    N+ +  F+L+Y +Q+    ++ R+N   LF    ++L
Sbjct: 130 EWNYCFDVHC-NSFFPSFVLLYVIQLFLLPVITRDNFISLFMGNTLYL 176


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 660  GIYRSFLCF**VLVLIRFGGALSFSEKTL 574
            GIY+S +CF   L + +FG  +S++ + +
Sbjct: 1182 GIYQSLVCFGVALFVFKFGDFVSWTGRNI 1210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,357,186
Number of Sequences: 5004
Number of extensions: 68408
Number of successful extensions: 134
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)