Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L04
         (1045 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    26   0.42 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    26   0.55 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   2.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   3.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   3.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   3.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   3.9  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 26.2 bits (55), Expect = 0.42
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 443 PPMNTPXLLTEAPLNPNANIHNMTXIXFPNIQHAR 547
           PP+  P +     +NP+A   +   + F N+Q  R
Sbjct: 181 PPLPLPPIFAPTMINPSAICESAAQLLFMNVQWVR 215


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.8 bits (54), Expect = 0.55
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 443 PPMNTPXLLTEAPLNPNANIHNMTXIXFPNIQHAR 547
           PP+  P +     +NP+A   +   + F N+Q  R
Sbjct: 181 PPLPLPPIFPPTMINPSAICESAAQLIFMNVQWVR 215


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 712 NQVRXILTSTYXNEXIPQPTXGXTPXPSTXXP 807
           N +  IL +   +  +P+PT   TP P    P
Sbjct: 384 NPLINILYANMNSYSVPEPTISTTPRPEWARP 415


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 413 MPNVXHVIPVSDDSVLD 363
           +P++  +IP  DD+ +D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 413 MPNVXHVIPVSDDSVLD 363
           +P++  +IP  DD+ +D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 413 MPNVXHVIPVSDDSVLD 363
           +P++  +IP  DD+ +D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 413 MPNVXHVIPVSDDSVLD 363
           +P++  +IP  DD+ +D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,346
Number of Sequences: 336
Number of extensions: 3180
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 29795033
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)