Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L04
         (1045 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    78   2e-15
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    48   3e-06
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    41   3e-04
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    36   0.009
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    29   1.1  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    27   5.8  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 78.2 bits (184), Expect = 2e-15
 Identities = 44/94 (46%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
 Frame = +3

Query: 327 KAKXVSMXLKYPIQHGIVTNWDDMXNIWHHTFYNXLRVTPQ*TPRXCSL-RXPSTPMPTY 503
           ++K   + LKYPI+HGIV NWDDM  IWHHTFYN LRV P+  P  C L   P  P    
Sbjct: 59  QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP--CLLTEAPLNPKSNR 116

Query: 504 IT*PXSXSQTFNTPGHVXXHPXPXLSLYXSGXTT 605
                   +TFN P          LSLY SG TT
Sbjct: 117 EKMTQIIFETFNAPAFYVA-IQAVLSLYASGRTT 149



 Score = 62.9 bits (146), Expect = 7e-11
 Identities = 29/39 (74%), Positives = 29/39 (74%)
 Frame = +1

Query: 196 MCKAGFARHDAPHAVFPSIVXRPPHQGXMVGMGHXDSXV 312
           MCKAGFA  DAP AVFPSIV RP H G MVGMG  DS V
Sbjct: 16  MCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYV 54


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 47.6 bits (108), Expect = 3e-06
 Identities = 24/94 (25%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
 Frame = +3

Query: 174 VIDNGSXYVQGRFRKT*CSSRRIPLXRXKAPPSRXDGRYGTQXLVXIVTRHKAKXVSMXL 353
           V+DNG+ +V+  + K      + P    + P  R + + G   +  ++   +A+ V   L
Sbjct: 7   VLDNGTGFVKVGYAKDNFPRFQFPSIVGR-PILRAEEKTGNVQIKDVMVGDEAEAVRSLL 65

Query: 354 --KYPIQHGIVTNWDDMXNIWHHTFYNXLRVTPQ 449
             KYP+++GI+ ++++M  +W +TF+  L++ P+
Sbjct: 66  QVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPR 99


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 351 LKYPIQHGIVTNWDDMXNIWHHTFYNXLRVTPQ 449
           L YPI+HG + NWD M   W  + +  LR  P+
Sbjct: 90  LDYPIRHGQIENWDHMERFWQQSLFKYLRCEPE 122



 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 464 LLTEAPLNPNANIHNMTXIXFPNIQHA 544
           LLTE PLNP  N  N   I F +   A
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCA 153


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 35.9 bits (79), Expect = 0.009
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +3

Query: 345 MXLKYPIQHGIVTNWDDMXNIWHHTFYN-XLRVTPQ*TPRXCSLRXPSTPMPTYIT*PXS 521
           + ++ PI+ GI+ NW DM  IW + + +  L   P+  P   +   P   +         
Sbjct: 69  LKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLT-EPPLANIRNKEKIAEY 127

Query: 522 XSQTFNTPGHVXXHPXPXLSLYXSGXTT 605
             +T N P  +     P L+LY S  TT
Sbjct: 128 FYETLNVPA-LSFSLQPVLALYASARTT 154



 Score = 29.5 bits (63), Expect = 0.82
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 202 KAGFARHDAPHAVFPSIVXRPPHQGXM 282
           KAGFA  D P  +FP+ V R  H+  M
Sbjct: 22  KAGFAGDDIPKCLFPTCVGRIKHERVM 48


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 345 MXLKYPIQHGIVTNWDDMXNIWHHTFYNXLRVTP 446
           M +K  I++G V NWD   ++W +     L+  P
Sbjct: 63  MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNP 96


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 360 PIQHGIVTNWDDMXNIWHHTFYNXLRVTPQ*TPRXCSLRXP-STPMPTY 503
           PIQ G V +W+ +   W H +   L+      P   + R P    +PTY
Sbjct: 113 PIQRGRVVDWEALKAFWKHLYSLLLK-----DPNDTTFRYPVCLVIPTY 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,682
Number of Sequences: 5004
Number of extensions: 45845
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 547228964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)