Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L03
         (920 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    69   1e-10
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    68   4e-10
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    51   4e-05
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    48   4e-04
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    39   0.21 
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    38   0.48 

>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 69.3 bits (162), Expect = 1e-10
 Identities = 37/58 (63%), Positives = 38/58 (65%)
 Frame = -3

Query: 606 RGAEPMEKRQQXRPFYGSWPFAGLLXTCXFLXYPLIXWITVLPPLSELIPLAAAERPS 433
           RGAEPMEKR +        P    L TC F  YPLI WITVLPPLSEL PLAA ERPS
Sbjct: 4   RGAEPMEKRLRCWLL----PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERPS 57


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 67.7 bits (158), Expect = 4e-10
 Identities = 49/119 (41%), Positives = 56/119 (47%)
 Frame = +1

Query: 385 VCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPXNQGITQEXTCXQKASKRPGTVK 564
           +C  G +PLPRSLTR ARSFGCGERY+LT           G   E T  +  SK     +
Sbjct: 30  ICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEEIRPR 80

Query: 565 RPRLLAFFHRLRPPGRAXXKIDAQVRGGETRQDYKXYXAFXXXXXXXXXXXXPXPLPXS 741
           R R    F     P  +  K DAQ+ GGETRQDYK    F            P  LP S
Sbjct: 81  RSR----FSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLPVS 135


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 51.2 bits (117), Expect = 4e-05
 Identities = 29/57 (50%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +1

Query: 349 CINESANXRGXAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPXNQGITQ 516
           CI + A  R  AV VL ALPL RS TRC RS GCG      +  R YG P  QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 47.6 bits (108), Expect = 4e-04
 Identities = 26/53 (49%), Positives = 28/53 (52%)
 Frame = +1

Query: 604 PGRAXXKIDAQVRGGETRQDYKXYXAFXXXXXXXXXXXXPXPLPXSGNTCPPF 762
           P  +  KIDAQVRGGETRQDYK    F            P  LP   +TCPPF
Sbjct: 22  PLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP---DTCPPF 71


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 38.7 bits (86), Expect = 0.21
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +2

Query: 152 DPXMIRYIDXFGQTTTKMQ 208
           DP MIRYID FGQTTT+MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 37.5 bits (83), Expect = 0.48
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = +3

Query: 468 HSKAVIRLSTXSGDNXGXNM 527
           HSKAVIRLST SGDN G NM
Sbjct: 40  HSKAVIRLSTESGDNAGKNM 59


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 599,712,168
Number of Sequences: 1657284
Number of extensions: 8976063
Number of successful extensions: 15538
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15535
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84441173866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)