Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L01
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.04 |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratas...    98   1e-21
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    31   0.17 
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    29   1.2  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    29   1.2  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    26   6.2  

>SPAC27D7.04 |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 96

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 41/90 (45%), Positives = 63/90 (70%)
 Frame = +3

Query: 387 LNQEERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMDHHPEWF 566
           +N   R   L    ++ W +Q     + K F+FKNF EA+GFM+ VAL A++++HHPEW 
Sbjct: 1   MNTSARLLALVSKSKNNWILQQGDTKLFKSFRFKNFIEAWGFMSCVALRAQQLNHHPEWT 60

Query: 567 NVYNKLQVTLSSHDVNGLSKRDIKMASFMD 656
           NVYNK+ +TL++HD  GL+++D+K+A F+D
Sbjct: 61  NVYNKVDITLTTHDTKGLTEKDLKLAEFID 90


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
 Frame = +3

Query: 414 LKPLLESGWKIQSNRDAIE------KEFQFKNFNEAFGFMTRVALLAEKMDHHPEWFNVY 575
           LKPLL++ W+I  +  +++      K F   NF   +  ++  + L   +++   +FN+Y
Sbjct: 119 LKPLLDTAWEIFDSSPSLKTLSMLHKSFNLHNFQSFYQKLSLDSSLILALNNFWSFFNLY 178

Query: 576 NKLQVTLSSHDVNGLSKRDI 635
               +T S H +N +  +DI
Sbjct: 179 ----LTNSPHIMNDIINKDI 194


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 330 VRYASVSSTSQSKRKMADKLNQEERTTELKPLLESGW 440
           + Y++ S+   S++  AD L    + TELKP    GW
Sbjct: 37  ILYSNRSACYASEKDYADALKDATKCTELKPDWAKGW 73


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 345 VSSTSQSKRKMADKLNQEERTTELKPLLESGWKIQSNRDAIEKE 476
           +S+    K++  DKL QE +  ELK + ES  K++   + +  +
Sbjct: 64  LSAIQSMKKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSDD 107


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = -2

Query: 157 KRKPNHKSHE*VYLVIFTKQHMEKQH*LKCHQL-------ICAVKSILRIPYKXQVGK 5
           KR PN+ S    ++V+FTK++    H LK H+        I     ILR+P + Q+ K
Sbjct: 87  KRIPNNDS----WVVVFTKKNRYFFHNLKSHESYWEPPLEISKDLKILRLPIRKQISK 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,853
Number of Sequences: 5004
Number of extensions: 62865
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)