Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_L01
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0159 + 27089006-27089064,27089925-27090007,27090414-270905... 46 4e-05
03_02_0689 - 10423661-10424343,10425580-10425628 33 0.30
12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379 32 0.70
12_01_0971 - 9781887-9781924,9782036-9782247,9782327-9784114,978... 29 3.8
12_02_0793 - 23200915-23202931,23203136-23203959 29 5.0
11_04_0365 - 16818468-16818514,16818619-16821706,16822860-168229... 29 5.0
11_03_0025 + 9047646-9047958,9048150-9048474,9049833-9051828,905... 29 5.0
09_04_0444 - 17649685-17650524 29 6.6
08_02_1019 - 23657175-23658047 29 6.6
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 29 6.6
04_04_0070 - 22509546-22509686,22509799-22509953,22510167-22510260 28 8.7
>01_06_0159 +
27089006-27089064,27089925-27090007,27090414-27090588,
27091442-27091592,27091629-27091752,27092378-27092446,
27093197-27093291
Length = 251
Score = 46.0 bits (104), Expect = 4e-05
Identities = 24/82 (29%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Frame = +3
Query: 414 LKPLLE-SGWKIQSNRDAIE--KEFQFKNFNEAFGFMTRVALLAEKMDHHPEWFNV-YNK 581
+K L++ GW++ + D ++ + ++ KNF + F+ VA +AE+ HHP+ V +N
Sbjct: 151 VKSLIKVGGWELATEGDILKLHRAWKVKNFVKGLEFLQLVAAVAEEEGHHPDLHLVGWNN 210
Query: 582 LQVTLSSHDVNGLSKRDIKMAS 647
+++ + +H V GL+ D +A+
Sbjct: 211 VKIDVWTHSVRGLTDNDFILAA 232
>03_02_0689 - 10423661-10424343,10425580-10425628
Length = 243
Score = 33.1 bits (72), Expect = 0.30
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +3
Query: 270 HPARPVRPARTVAINRSLAAVRYASVSSTSQSKRKMADKLNQEERTTELKPLLESGWKIQ 449
HP P RP T A +R+ +RY S + +MA + R ++PL++ W+ +
Sbjct: 157 HPPSPRRPTMTAAASRT-TRMRY---SDNQEGFLEMARSCTHKRRAVAVRPLVQRTWRQR 212
Query: 450 SN 455
S+
Sbjct: 213 SS 214
>12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379
Length = 881
Score = 31.9 bits (69), Expect = 0.70
Identities = 27/102 (26%), Positives = 42/102 (41%)
Frame = +3
Query: 393 QEERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMDHHPEWFNV 572
Q+ + LK L S ++ + + K + +LLA K D +W V
Sbjct: 343 QDSKKLFLKRLFHSDSNFPTHLEEVSHAIIKKCHGFPLAIICLASLLASKSDTKDQWEQV 402
Query: 573 YNKLQVTLSSHDVNGLSKRDIKMASFMDKNYN*TFFLVYNGV 698
+N L SS G+S DI + S+ D Y+ L+Y V
Sbjct: 403 HNSLSSAFSS---QGMS--DILLLSYYDLPYHLKTCLLYLSV 439
>12_01_0971 -
9781887-9781924,9782036-9782247,9782327-9784114,
9784630-9785432
Length = 946
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +3
Query: 525 ALLAEKMDHHPEWFNVYNKLQVTLSSHDVNGLSKRDIKMASFMDKNY 665
+LL+ K D +W V+N + VTL+S DV R I M S+ D Y
Sbjct: 373 SLLSIKPDTEDQWMQVHNSIGVTLNS-DV---EVRKILMLSYYDLPY 415
>12_02_0793 - 23200915-23202931,23203136-23203959
Length = 946
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +3
Query: 507 GFMTRVALLAEKMDHHPEWFNVYNKLQVTLSSHDVNGLSKRDIKMASFMDKNYN*TFFLV 686
G +T +LLA K EW +++N + L D + + I + S+ D Y+ L+
Sbjct: 373 GIITVASLLANKASTKEEWESIHNSIGSALEK-DTDMEEMKRILLLSYDDLPYHLKTCLL 431
Query: 687 YNGVI 701
Y +I
Sbjct: 432 YLSII 436
>11_04_0365 -
16818468-16818514,16818619-16821706,16822860-16822919,
16823595-16823954
Length = 1184
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 212 NYDVCEWVFVMCTFDSDTLSPR 277
+YDVC WV+V FDS L+ +
Sbjct: 265 SYDVCVWVYVSDHFDSTNLTKK 286
>11_03_0025 +
9047646-9047958,9048150-9048474,9049833-9051828,
9051991-9052190,9052851-9052899
Length = 960
Score = 29.1 bits (62), Expect = 5.0
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Frame = +3
Query: 390 NQEERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMDHHPEWFN 569
+Q+ +K + SG + + + K + LLA K D EW
Sbjct: 272 HQDSSKLFVKKIFPSGCGVPQHLKEVSNAILKKCGGLPLAILIIAGLLASKYDRKDEWEA 331
Query: 570 VYNKLQVTL-SSHDVNGLSKRDIKMASFMD 656
V+N + L +H + G R I M SF D
Sbjct: 332 VHNSIGSELGKNHTLEGF--RRILMLSFYD 359
>09_04_0444 - 17649685-17650524
Length = 279
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 339 ASVSSTSQSKRKMADKLNQEERTTELKPLLESGWKIQSNRDAIEKEF 479
A S + K++ K QE++ L GW+IQ + +A ++F
Sbjct: 206 AGPSGSGSGKKRFRTKFTQEQKDKMLAFAERVGWRIQKHDEAAVQQF 252
>08_02_1019 - 23657175-23658047
Length = 290
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 339 ASVSSTSQSKRKMADKLNQEERTTELKPLLESGWKIQSNRDAIEKEF 479
A S + K++ K QE++ L GW+IQ + +A ++F
Sbjct: 217 AGPSGSGSGKKRFRTKFTQEQKDKMLAFAERLGWRIQKHDEAAVQQF 263
>01_06_0293 -
28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 318 SLAAVRYASVSSTSQSKR--KMADKLNQEERTTELKPLLESGWKIQS 452
+L A+R S S + KR ADK ++ R+T KPL ES + QS
Sbjct: 560 NLNAMRMKSNLSKRERKRGSNSADKPKKKGRSTAFKPLTESSGRKQS 606
>04_04_0070 - 22509546-22509686,22509799-22509953,22510167-22510260
Length = 129
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 384 KLNQEERTTELKPLLESG-WKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMD 548
K+ + T EL L G WK+ +N++ ++ +FK+ A +T AL + D
Sbjct: 63 KVEDIDYTAELLVLASDGLWKVMNNQEVVDVAKRFKDPQAAAKQLTAEALKRDSKD 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,800,684
Number of Sequences: 37544
Number of extensions: 351929
Number of successful extensions: 791
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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