Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_L01
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098993-8|AAC67465.2|  142|Caenorhabditis elegans Pterin carbin...   138   5e-33
U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein...    30   2.5  

>AF098993-8|AAC67465.2|  142|Caenorhabditis elegans Pterin
           carbinolamine dehydrataseprotein 1 protein.
          Length = 142

 Score =  138 bits (334), Expect = 5e-33
 Identities = 60/96 (62%), Positives = 74/96 (77%)
 Frame = +3

Query: 369 RKMADKLNQEERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMD 548
           RK    L + ERT +L  L  +GWK+   RDAI+KEF FK+FNEAFGFMTRV L AEKMD
Sbjct: 42  RKKMPLLTESERTEQLSGLKTAGWKLVEGRDAIQKEFHFKDFNEAFGFMTRVGLKAEKMD 101

Query: 549 HHPEWFNVYNKLQVTLSSHDVNGLSKRDIKMASFMD 656
           HHPEWFNVYNK+ +TLS+HD  GLS  D+K+A+F++
Sbjct: 102 HHPEWFNVYNKVDITLSTHDCGGLSPNDVKLATFIE 137


>U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical
           protein R07G3.3c protein.
          Length = 1316

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = +3

Query: 411 ELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEK----MDHHPEWFNVYN 578
           E+K L      ++ +++A+EKE Q   F E   + T  +L AE     M    E  N  +
Sbjct: 132 EIKKLTNEQASLRHSKEALEKEIQGIQF-ERQKYATERSLHAESKTWLMQEVSERDNKVS 190

Query: 579 KLQVTLSSHDVNGLSKR 629
            L++ LS+ D+ G ++R
Sbjct: 191 SLRLELSNKDIQGANER 207


>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical
           protein R07G3.3a protein.
          Length = 1982

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = +3

Query: 411 ELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEK----MDHHPEWFNVYN 578
           E+K L      ++ +++A+EKE Q   F E   + T  +L AE     M    E  N  +
Sbjct: 132 EIKKLTNEQASLRHSKEALEKEIQGIQF-ERQKYATERSLHAESKTWLMQEVSERDNKVS 190

Query: 579 KLQVTLSSHDVNGLSKR 629
            L++ LS+ D+ G ++R
Sbjct: 191 SLRLELSNKDIQGANER 207


>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical
           protein R07G3.3b protein.
          Length = 1987

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = +3

Query: 411 ELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEK----MDHHPEWFNVYN 578
           E+K L      ++ +++A+EKE Q   F E   + T  +L AE     M    E  N  +
Sbjct: 132 EIKKLTNEQASLRHSKEALEKEIQGIQF-ERQKYATERSLHAESKTWLMQEVSERDNKVS 190

Query: 579 KLQVTLSSHDVNGLSKR 629
            L++ LS+ D+ G ++R
Sbjct: 191 SLRLELSNKDIQGANER 207


>U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein
           10, isoform a protein.
          Length = 559

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = +3

Query: 285 VRPARTVAINRSLAAVRYASVSSTSQSKRKMADKLNQEERTTELKPLLESGWKIQSNRDA 464
           +RP+    +NR   AV+ + +   S  K K  +K NQ+  T               N++ 
Sbjct: 457 MRPSDDELLNRQPIAVQASYIDDESDGKLKNEEKQNQQNATQPPYCYTNQNPTPYQNQNQ 516

Query: 465 IEKEFQFKNF 494
           I+ + Q+ N+
Sbjct: 517 IQNQNQYSNY 526


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,173,153
Number of Sequences: 27780
Number of extensions: 344026
Number of successful extensions: 871
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)