Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_K21
(975 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 39 0.005
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 38 0.016
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 36 0.049
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 36 0.065
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 35 0.085
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 32 0.80
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 29 5.6
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 39.1 bits (87), Expect = 0.005
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Frame = +3
Query: 228 RKSKLDNANTINVTXQKTLQSRGXAC----NKPKRPLTPFXXXMSQMRPALLAKNPGISS 395
+K K DN Q+ + G A N+PK+P + F + R L + PG++S
Sbjct: 382 KKEKTDNIIKKTKEEQRKKKVGGAAAAADPNRPKKPASSFLLFSKEARRQLAEERPGVAS 441
Query: 396 XEAIAWTSKHWXQL---DMETXTQMAKE----YQKDXEDYNKIKA 509
A S W +L + + A E Y++D E+Y K A
Sbjct: 442 STLTALVSVKWKELGEAEKQAWNGKAAEAMAAYKRDMEEYTKAAA 486
Score = 31.9 bits (69), Expect = 0.80
Identities = 19/84 (22%), Positives = 34/84 (40%)
Frame = +3
Query: 306 NKPKRPLTPFXXXMSQMRPALLAKNPGISSXEAIAWTSKHWXQLDMETXTQMAKEYQKDX 485
+KPK+P++ + Q R AL+A+ + I T + W + +K
Sbjct: 283 SKPKQPMSAYFVYTQQRRAALVAEKKNVPEIGRI--TGEEWKAMSEAEKAPFEAAARKQR 340
Query: 486 EDYNKIKAXYETSLTEDXXGRYKQ 557
E+Y A Y E+ + K+
Sbjct: 341 EEYQVEMAAYRQRKQEEAACQEKE 364
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 37.5 bits (83), Expect = 0.016
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 285 QSRGXACNKPKRPLTPFXXXMSQMRPALLAKNPGISSXEAIAWTS-KHWXQLDMETXTQM 461
+ + A KPKRP + F MS+ R A +P S A++ + + W + +
Sbjct: 24 RKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQEKAPY 83
Query: 462 AKEYQKDXEDYNKIKAXYE 518
+ + +DY K KA ++
Sbjct: 84 VDKAGQKKQDYEKTKANFD 102
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 35.9 bits (79), Expect = 0.049
Identities = 20/77 (25%), Positives = 31/77 (40%)
Frame = +3
Query: 306 NKPKRPLTPFXXXMSQMRPALLAKNPGISSXEAIAWTSKHWXQLDMETXTQMAKEYQKDX 485
N PKR +TPF R + NP + + E + W ++ E ++ Q D
Sbjct: 597 NAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKMTGEEKQPYIQQSQVDK 656
Query: 486 EDYNKIKAXYETSLTED 536
+ Y K A Y + D
Sbjct: 657 KRYEKESAVYRGAAAMD 673
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 35.5 bits (78), Expect = 0.065
Identities = 19/77 (24%), Positives = 31/77 (40%)
Frame = +3
Query: 306 NKPKRPLTPFXXXMSQMRPALLAKNPGISSXEAIAWTSKHWXQLDMETXTQMAKEYQKDX 485
N PKR + PF R L NP +++ E + W ++ E ++ Q D
Sbjct: 556 NAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKMTAEEKQPYVEQSQVDK 615
Query: 486 EDYNKIKAXYETSLTED 536
+ Y + A Y + D
Sbjct: 616 KRYAEESAAYRGAAAMD 632
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 35.1 bits (77), Expect = 0.085
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 285 QSRGXACNKPKRPLTPFXXXMSQMRPALLAKNPGISSXEAIAWTS-KHWXQLDMETXTQ 458
+ + KPKR LTPF +++ RP + K+P A+ + + W + E Q
Sbjct: 16 RKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEKAQ 74
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 31.9 bits (69), Expect = 0.80
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Frame = +3
Query: 309 KPKRPLTPFXXXMSQMRPALLAKNPGISSXEAIAWT-SKHWXQLDME-------TXTQMA 464
+PK+P T F M R +NP + S + + + W + E T+
Sbjct: 48 RPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMTFEERVKYYDIATEKR 107
Query: 465 KEYQKDXEDYNKIKAXYETSLTED 536
EY+K +++K K E S D
Sbjct: 108 AEYEKAVAEFDKKKESGELSEESD 131
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 29.1 bits (62), Expect = 5.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 306 NKPKRPLTPFXXXMSQMRPALLAKNPGISSXEAI 407
NKPKRP + F M Q R K+P + I
Sbjct: 33 NKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVI 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,954,800
Number of Sequences: 37544
Number of extensions: 247279
Number of successful extensions: 608
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2834967080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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