Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_K21
(975 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 38 0.011
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 30 2.2
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 30 2.2
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 30 2.2
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 30 2.2
U64847-8|AAQ91904.1| 558|Caenorhabditis elegans Acyltransferase... 29 6.6
U64847-7|AAB04876.1| 718|Caenorhabditis elegans Acyltransferase... 29 6.6
U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein... 28 8.8
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 28 8.8
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 37.9 bits (84), Expect = 0.011
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = +3
Query: 282 LQSRGXACNKPKRPLTPFXXXMSQMRPALLAKNPGISSXEAIAWTSKHWXQLDMETXTQM 461
+ SRG P+RPL P+ +M P + A+NP + K+W L +
Sbjct: 18 MSSRGPKV--PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPDGEKSHY 75
Query: 462 AKEYQKDXEDYNK 500
EY+ + DY K
Sbjct: 76 QHEYELEKADYEK 88
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/72 (23%), Positives = 27/72 (37%)
Frame = +3
Query: 312 PKRPLTPFXXXMSQMRPALLAKNPGISSXEAIAWTSKHWXQLDMETXTQMAKEYQKDXED 491
PKR L+ F RP + A +P + K W + ET ++ Q D +
Sbjct: 134 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDR 193
Query: 492 YNKIKAXYETSL 527
Y Y+ +
Sbjct: 194 YADEMRNYKAEM 205
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/72 (23%), Positives = 27/72 (37%)
Frame = +3
Query: 312 PKRPLTPFXXXMSQMRPALLAKNPGISSXEAIAWTSKHWXQLDMETXTQMAKEYQKDXED 491
PKR L+ F RP + A +P + K W + ET ++ Q D +
Sbjct: 133 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDR 192
Query: 492 YNKIKAXYETSL 527
Y Y+ +
Sbjct: 193 YADEMRNYKAEM 204
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/72 (23%), Positives = 27/72 (37%)
Frame = +3
Query: 312 PKRPLTPFXXXMSQMRPALLAKNPGISSXEAIAWTSKHWXQLDMETXTQMAKEYQKDXED 491
PKR L+ F RP + A +P + K W + ET ++ Q D +
Sbjct: 135 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDR 194
Query: 492 YNKIKAXYETSL 527
Y Y+ +
Sbjct: 195 YADEMRNYKAEM 206
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/72 (23%), Positives = 27/72 (37%)
Frame = +3
Query: 312 PKRPLTPFXXXMSQMRPALLAKNPGISSXEAIAWTSKHWXQLDMETXTQMAKEYQKDXED 491
PKR L+ F RP + A +P + K W + ET ++ Q D +
Sbjct: 135 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDR 194
Query: 492 YNKIKAXYETSL 527
Y Y+ +
Sbjct: 195 YADEMRNYKAEM 206
>U64847-8|AAQ91904.1| 558|Caenorhabditis elegans
Acyltransferase-like protein 6,isoform b protein.
Length = 558
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 458 LGXCLHIXLXPMFRRPCYSLXG*YARVLGKKSWS 357
L C + MF RPC SL VLG+K WS
Sbjct: 378 LSLCDWLQFEFMFCRPCDSLRELVHNVLGQKEWS 411
>U64847-7|AAB04876.1| 718|Caenorhabditis elegans
Acyltransferase-like protein 6,isoform a protein.
Length = 718
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 458 LGXCLHIXLXPMFRRPCYSLXG*YARVLGKKSWS 357
L C + MF RPC SL VLG+K WS
Sbjct: 538 LSLCDWLQFEFMFCRPCDSLRELVHNVLGQKEWS 571
>U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein
protein.
Length = 438
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +3
Query: 315 KRPLTPFXXXMSQMRPALLAK--NPGISSXEAIAWTSKHWXQLDMETXTQMAKEYQKDXE 488
K+PL F M + R ALL + N S E K W L E + + +KD E
Sbjct: 193 KKPLNAFVWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKYFEMAKKDKE 252
Query: 489 DYNK 500
+ +
Sbjct: 253 THKE 256
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +3
Query: 315 KRPLTPFXXXMSQMRPALLAK--NPGISSXEAIAWTSKHWXQLDMETXTQMAKEYQKDXE 488
K+PL F M + R ALL + N S E K W L E + + +KD E
Sbjct: 192 KKPLNAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKYFEMAKKDKE 251
Query: 489 DYNK 500
+ +
Sbjct: 252 THKE 255
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,486,917
Number of Sequences: 27780
Number of extensions: 192078
Number of successful extensions: 347
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2531861596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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