Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_K17
(950 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.006
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.034
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.42
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.55
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.96
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.2
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 5.1
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 26 9.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 36.3 bits (80), Expect = 0.006
Identities = 31/121 (25%), Positives = 31/121 (25%), Gaps = 4/121 (3%)
Frame = +1
Query: 595 PPXXXRXAGXXXPXGGGXGGXPXTPXXXXG---QKPVNXXXGXXGKXPXTGPXXXGXPXW 765
PP P G P P Q P P P G
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401
Query: 766 APPPXXVAXXQXXXP-PXXGG*PPXGPXXXPGGPPPXXPXGXPVXPPXXXPGXPXPXPPX 942
A PP A P P PP P P PP P G P PP P P
Sbjct: 402 ALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPA 461
Query: 943 G 945
G
Sbjct: 462 G 462
Score = 30.3 bits (65), Expect = 0.42
Identities = 18/56 (32%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Frame = +1
Query: 772 PPXXVAXXQXXXPPXXGG*PPXGPXXXPGGP-PPXXPXGXPVXPPXXXPGXPXPXP 936
PP PP P P P P P P G P PP P P P P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP-LPPAAPAPPP 478
Score = 29.9 bits (64), Expect = 0.55
Identities = 27/85 (31%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Frame = +1
Query: 718 GKXPX-TGPXXXGXPXWAPPPXXVAXXQXXXPP-XXGG*PPXGPXXXPG---GPPP---X 873
GK P G P PPP A PP PP P P PPP
Sbjct: 323 GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSS 382
Query: 874 XPXGXPVXPPXXXPGXPXP-XPPXG 945
P PP PG P PP G
Sbjct: 383 RAVSNPPAPPPAIPGRSAPALPPLG 407
Score = 25.8 bits (54), Expect = 9.0
Identities = 16/58 (27%), Positives = 17/58 (29%)
Frame = +1
Query: 757 PXWAPPPXXVAXXQXXXPPXXGG*PPXGPXXXPGGPPPXXPXGXPVXPPXXXPGXPXP 930
P APP + P P P P PP P P PP P P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP--LPPAAPAPPPAPAPAPAAP 487
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.9 bits (74), Expect = 0.034
Identities = 21/61 (34%), Positives = 22/61 (36%)
Frame = -1
Query: 938 GGXGXGXPGXXXGGXTGXPXGXXGGGPPGXXXGPXGGYPPXXGGXXXWXXATXXGGGAHX 759
G G G GG G P G GG PG G GG+ GG G G H
Sbjct: 212 GFGGEGHHHGGHGGFGGGPGGFEGG--PGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269
Query: 758 G 756
G
Sbjct: 270 G 270
Score = 31.5 bits (68), Expect = 0.18
Identities = 23/70 (32%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Frame = -1
Query: 944 PXGGXGXGXPGXXXG-GXTGXPXGXXGGGPPGXXXGPXGGYPPXXGGXXXWXXATXXGGG 768
P G G G G G G G GGGP G G GG+ GG G G
Sbjct: 201 PPGPGGFGGFGGFGGEGHHHGGHGGFGGGP-GGFEGGPGGFGGGPGGFGGGLGGFGGGPG 259
Query: 767 AHXGNPXXXG 738
G P G
Sbjct: 260 GFGGGPGGHG 269
Score = 27.1 bits (57), Expect = 3.9
Identities = 18/60 (30%), Positives = 20/60 (33%)
Frame = -1
Query: 935 GXGXGXPGXXXGGXTGXPXGXXGGGPPGXXXGPXGGYPPXXGGXXXWXXATXXGGGAHXG 756
G G G G GG P G G G G GG+ GG + GG G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.42
Identities = 20/58 (34%), Positives = 21/58 (36%)
Frame = +1
Query: 766 APPPXXVAXXQXXXPPXXGG*PPXGPXXXPGGPPPXXPXGXPVXPPXXXPGXPXPXPP 939
+PPP A P PP P GGPPP P PP P P PP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIM--GGPPPPPP------PPGVAGAGPPPPPP 780
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.55
Identities = 25/96 (26%), Positives = 26/96 (27%), Gaps = 1/96 (1%)
Frame = +1
Query: 652 GXPXTPXXXXGQKPVNXXXGXXG-KXPXTGPXXXGXPXWAPPPXXVAXXQXXXPPXXGG* 828
G P P PV G P P APP + P G
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGI 1178
Query: 829 PPXGPXXXPGGPPPXXPXGXPVXPPXXXPGXPXPXP 936
PP P G PP P P P P P P
Sbjct: 1179 PPV-PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 29.1 bits (62), Expect = 0.96
Identities = 19/63 (30%), Positives = 20/63 (31%)
Frame = +1
Query: 757 PXWAPPPXXVAXXQXXXPPXXGG*PPXGPXXXPGGPPPXXPXGXPVXPPXXXPGXPXPXP 936
P APP + P G PP P PP P G P P P P P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGA-PPV-PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Query: 937 PXG 945
G
Sbjct: 1175 SSG 1177
Score = 26.2 bits (55), Expect = 6.8
Identities = 21/65 (32%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Frame = +1
Query: 757 PXWAPPPXXVAXXQXXXPPXXGG*PPXGPXXXPGGPPPXXPXGX--PVXPPXXXPGXPXP 930
P A PP P PP P G PP P PV PP P P P
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPV-PAPSSGIPPVPKPAAGVPPVPPPSEAP--PVP 1201
Query: 931 XPPXG 945
P G
Sbjct: 1202 KPSVG 1206
Score = 25.8 bits (54), Expect = 9.0
Identities = 16/55 (29%), Positives = 17/55 (30%)
Frame = +1
Query: 766 APPPXXVAXXQXXXPPXXGG*PPXGPXXXPGGPPPXXPXGXPVXPPXXXPGXPXP 930
APP + P G PP P P PV PP P P P
Sbjct: 1168 APPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.1 bits (62), Expect = 0.96
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 737 APXPRGXPXGPPPPXXWXXPXRXXPPXXGG 826
A P G P PPPP + P + PP G
Sbjct: 2 ASLPPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +1
Query: 865 PPXXPXGXPVXPPXXXPGXPXPXPPXG 945
PP P P P P P P PP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 852 PRGAPPXXPXGAPXXPPPXPPGXPXP 929
P G PP P PP PP P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +3
Query: 864 PPXXPXGAPXXPPPXPPGXPXPLXPXG 944
PP P P P PP P P P G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/59 (30%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Frame = +1
Query: 772 PPXXVAXXQXXXPPXXGG*PPX---GPXXXPGGPPPXXPXGXPVXPPXXXPGXPXPXPP 939
PP PP PP P PPP P PV P P P PP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAA-PVKSPPSAPSLPSAVPP 196
Score = 26.6 bits (56), Expect = 5.1
Identities = 18/70 (25%), Positives = 20/70 (28%)
Frame = +1
Query: 721 KXPXTGPXXXGXPXWAPPPXXVAXXQXXXPPXXGG*PPXGPXXXPGGPPPXXPXGXPVXP 900
+ P + P P P P PP PP P PP P P
Sbjct: 138 RPPTSAPPRPSIPP--PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP-SLPSAV 194
Query: 901 PXXXPGXPXP 930
P P P P
Sbjct: 195 PPMPPKVPPP 204
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.2
Identities = 19/58 (32%), Positives = 19/58 (32%)
Frame = +1
Query: 757 PXWAPPPXXVAXXQXXXPPXXGG*PPXGPXXXPGGPPPXXPXGXPVXPPXXXPGXPXP 930
P A PP A PP PP P GPP P P P P P P
Sbjct: 1694 PQSAAPPQMSAPTPP--PPPMSVPPPPSAPPMPAGPPSAPP---PPLPASSAPSVPNP 1746
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Frame = +1
Query: 829 PPXGPXXXPGGPP-PXXPXGXPVXPPXXXPGXPXPXPP 939
PP P P P P P G P PP P P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +3
Query: 852 PRGAPPXXPXGAPXXPPPXPPGXPXPLXP 938
P APP P G P PPP P P P
Sbjct: 1717 PPSAPPM-PAGPPSAPPPPLPASSAPSVP 1744
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3
Query: 867 PXXPXGAPXXPPPXPPG 917
P P GAP PPP PPG
Sbjct: 280 PMGPGGAPLVPPP-PPG 295
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -1
Query: 914 GXXXGGXTGXPXGXXGGGPPGXXXGP 837
G G G P G GG P G GP
Sbjct: 613 GAPGGAPGGMPGGAPGGAPGGADNGP 638
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,330
Number of Sequences: 5004
Number of extensions: 29180
Number of successful extensions: 199
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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