Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_K14
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    29   0.90 
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    26   6.3  
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    26   6.3  
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    26   8.4  

>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 188 MSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 301
           MSA+M +    RE++K++NP     ++    G+ WK +
Sbjct: 20  MSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKEL 57


>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/36 (22%), Positives = 21/36 (58%)
 Frame = +2

Query: 191 SAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKS 298
           +A++L+       +   NP +  ++++K  GE+W++
Sbjct: 108 NAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/36 (22%), Positives = 21/36 (58%)
 Frame = +2

Query: 191 SAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKS 298
           +A++L+       +   NP +  ++++K  GE+W++
Sbjct: 108 NAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 345 SLALAAFCSHSVLSFIDFQISP 280
           +L L A C +S L+FI +QI P
Sbjct: 173 TLYLVALCYYSYLTFIGYQILP 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,221
Number of Sequences: 5004
Number of extensions: 40204
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)