Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_K14
(900 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 44 1e-04
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 44 1e-04
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 44 2e-04
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 42 6e-04
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 38 0.013
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 37 0.017
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 36 0.052
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 31 1.1
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 31 1.1
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 31 1.1
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 31 1.1
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 31 1.1
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 30 2.6
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 30 2.6
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 30 2.6
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 30 2.6
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 29 4.5
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 29 4.5
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +2
Query: 188 MSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWXXXXXXXXXXXXXDLE 367
MSA+ W+ RE+IK PG+ V ++AK G W + DK+ W D+
Sbjct: 32 MSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRWEKKAADDKKRYEVDIA 89
Query: 368 SY 373
+Y
Sbjct: 90 NY 91
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +2
Query: 188 MSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWXXXXXXXXXXXXXDLE 367
MSA+ W+ RE+IK PG+ V ++AK G W + DK+ W D+
Sbjct: 32 MSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRWEKKAADDKKRYEVDIA 89
Query: 368 SY 373
+Y
Sbjct: 90 NY 91
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +2
Query: 191 SAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK--DKTEWXXXXXXXXXXXXXDL 364
SAYM W ++R ++K + G V ++AKKGG WK+M DK +W ++
Sbjct: 561 SAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTMSSDDKKKWEEKAEEDKSRYEKEM 618
Query: 365 ESYNAN 382
+ Y N
Sbjct: 619 KEYRKN 624
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 41.9 bits (94), Expect = 6e-04
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 191 SAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK--DKTEWXXXXXXXXXXXXXDL 364
+AY++W N+ R +K + G + ++AKK G WKSM DK EW ++
Sbjct: 566 TAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSADDKKEWNDKAAQDKARYEAEM 623
Query: 365 ESYNAN 382
+ Y N
Sbjct: 624 KEYKKN 629
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 37.5 bits (83), Expect = 0.013
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +2
Query: 188 MSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 310
M+A+M+W R+++ ENP + +EI+K+ G WK + ++
Sbjct: 64 MNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQ 104
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 37.1 bits (82), Expect = 0.017
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +2
Query: 188 MSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 310
M+A+M+W R ++ +NP + +EI+K+ G WK + ++
Sbjct: 52 MNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQ 92
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 35.5 bits (78), Expect = 0.052
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 188 MSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 310
M+A+M+W R +I P + EI+K+ G W+S+ D+
Sbjct: 97 MNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDE 137
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 188 MSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 307
M+A+M+W R +I P + + I+K G WK M +
Sbjct: 182 MNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 221
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 188 MSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 307
M+A+M+W R +I P + + I+K G WK M +
Sbjct: 179 MNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 218
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 188 MSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 307
M+A+M+W R +I P + + I+K G WK M +
Sbjct: 285 MNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 324
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 188 MSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 307
M+A+M+W R +I P + + I+K G WK M +
Sbjct: 333 MNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 188 MSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 307
M+A+M+W R +I P + + I+K G WK M +
Sbjct: 333 MNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 191 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 307
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 49 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 89
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 191 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 307
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 191 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 307
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 191 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 307
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 191 SAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 310
S Y+L+ R++I ENP E++K G WK + ++
Sbjct: 1454 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 191 SAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 310
S Y+L+ R++I ENP E++K G WK + ++
Sbjct: 1454 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 191 SAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 310
S Y+L+ R++I ENP E++K G WK + ++
Sbjct: 84 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,903,540
Number of Sequences: 27780
Number of extensions: 232034
Number of successful extensions: 479
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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