Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_K13
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0088 + 14494711-14494931,14496309-14496399,14496496-144965... 41 0.001
09_06_0132 - 21042653-21042873,21042950-21043027,21043106-210431... 32 0.52
11_06_0697 + 26371193-26371397,26371562-26374254 32 0.69
11_01_0428 + 3279662-3279784,3281676-3281756,3281845-3281933,328... 32 0.69
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 30 2.8
06_03_0749 + 24133302-24134274,24134585-24135272,24135751-241358... 29 6.4
>09_04_0088 +
14494711-14494931,14496309-14496399,14496496-14496571,
14496671-14496755,14497381-14497450,14499111-14499316,
14499434-14499508,14501043-14501133,14501400-14501441,
14501661-14501741,14502010-14502089,14502254-14502365
Length = 409
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +1
Query: 595 LTIFSVLLALKIDGVLNSAWWTIFAPLFVSDAMNA 699
L F+ LLALK+DG+ +WW +F PL++ A+ A
Sbjct: 54 LLCFTALLALKLDGLFRGSWWVLFTPLWLFHAVIA 88
>09_06_0132 -
21042653-21042873,21042950-21043027,21043106-21043167,
21043504-21043578,21043664-21043752,21043825-21043905,
21044939-21045076,21046299-21046429,21046521-21046592,
21047218-21047275,21047362-21047461,21047544-21047617,
21047701-21047836,21047913-21048137,21048211-21048446,
21048949-21049081,21049195-21049484
Length = 732
Score = 32.3 bits (70), Expect = 0.52
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +3
Query: 186 DNVLFITKKTNFKAQLDKCCDLLT-RGEKEIILHGLGAAIQRCCNLALQLEILFSGTCQI 362
+N + IT + + + LL +G E++ +G AI + +A ++ G Q
Sbjct: 508 ENEIRITTQGRMRNYITYATTLLQDKGSDEVVFKAMGRAINKTVMIAELIKRRIVGLHQ- 566
Query: 363 EVNTGSVDLVDDLEPLTDEL 422
TGS D+ D EPL + L
Sbjct: 567 NTTTGSTDITDMWEPLEEGL 586
>11_06_0697 + 26371193-26371397,26371562-26374254
Length = 965
Score = 31.9 bits (69), Expect = 0.69
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +3
Query: 264 EKEIILHGLGAAIQRCCNLALQLEILFSGTCQIEVNTGSVDLVDDLE 404
E+ + LH L +AI + CNL +L + +S Q+ G ++ ++D+E
Sbjct: 573 ERSVALHSLPSAITQLCNLR-RLGLNYSPIYQVPKGIGKLEFLNDVE 618
>11_01_0428 +
3279662-3279784,3281676-3281756,3281845-3281933,
3282011-3282085,3282211-3282269,3282316-3282414,
3282762-3283013,3283050-3283180
Length = 302
Score = 31.9 bits (69), Expect = 0.69
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 186 DNVLFITKKTNFKAQLDKCCDLLTR-GEKEIILHGLGAAIQRCCNLALQLEILFSGTCQI 362
+N + IT + + + LL G EI++ +G AI + + ++ G QI
Sbjct: 18 ENEIRITAQGRMRNYISYGMSLLEENGHDEIVIKAMGRAINKTVMVVELIKRRIGGLHQI 77
Query: 363 EVNTGSVDLVDDLEPLTDEL 422
+T S+D+ D EPL + L
Sbjct: 78 -TSTESIDITDTWEPLEEGL 96
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 306 RCCNLALQLEILFSGTCQIEVNTGSVDLVDDLEPL 410
+CCN+ +L F+ C E + + DLEPL
Sbjct: 1290 QCCNILSKLLAAFNSNCSTETDAALGKQLQDLEPL 1324
>06_03_0749 +
24133302-24134274,24134585-24135272,24135751-24135857,
24137565-24137815
Length = 672
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 632 SILRANSTENIVSVIRLIHISNTVSPIHCTISFSVKN 522
S+ RAN + V H+S + S I T+ FSVKN
Sbjct: 616 SVARANCLPSPVPSHPCAHVSLSTSAIQITLQFSVKN 652
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,593,065
Number of Sequences: 37544
Number of extensions: 369829
Number of successful extensions: 746
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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