Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_K13
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-17|CAB60596.2|  130|Caenorhabditis elegans Hypothetical...    68   8e-12
AF036706-15|AAK39285.1|  145|Caenorhabditis elegans Hypothetical...    55   6e-08
AF036706-16|AAM97947.1|  139|Caenorhabditis elegans Hypothetical...    45   6e-05
AL117204-39|CAB55145.4|  422|Caenorhabditis elegans Hypothetical...    29   3.3  
U50308-8|AAG24032.1|  562|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z83106-4|CAB05496.1|  343|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AL132865-17|CAB60596.2|  130|Caenorhabditis elegans Hypothetical
           protein Y62E10A.2 protein.
          Length = 130

 Score = 68.1 bits (159), Expect = 8e-12
 Identities = 29/97 (29%), Positives = 56/97 (57%)
 Frame = +3

Query: 126 RYPNKNYALKKRLPPRPVNGDNVLFITKKTNFKAQLDKCCDLLTRGEKEIILHGLGAAIQ 305
           R+  K   +++R P +P +  N ++IT+KTN ++Q     ++L     E+ +HG+GA+I 
Sbjct: 11  RFDEKTNEMRRRPPVKPSSNPNHIYITRKTNVESQSKSTEEMLNNAFDEVFIHGMGASIN 70

Query: 306 RCCNLALQLEILFSGTCQIEVNTGSVDLVDDLEPLTD 416
           +    A+++E  F G+ + ++ T +V   DD+  L D
Sbjct: 71  KALVFAMEVERRFGGSVKSDIQTSTVQCTDDIVSLLD 107


>AF036706-15|AAK39285.1|  145|Caenorhabditis elegans Hypothetical
           protein T07A9.12a protein.
          Length = 145

 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 22/74 (29%), Positives = 45/74 (60%)
 Frame = +1

Query: 517 IMFFTLNEIVQWIGLTVFEIWINLITLTIFSVLLALKIDGVLNSAWWTIFAPLFVSDAMN 696
           ++  TL E+  W  +T+FE+W++   + + SV+L LK+   ++ ++  + +PLFV  A +
Sbjct: 1   MVLLTLREMTTWFDITLFELWVHFAAIIVSSVMLCLKLHETVSISYMWVASPLFVGLAFS 60

Query: 697 AYFCCIVCIRMNLE 738
            +F  I+ +R  +E
Sbjct: 61  YFFVFIIYLRSCVE 74


>AF036706-16|AAM97947.1|  139|Caenorhabditis elegans Hypothetical
           protein T07A9.12b protein.
          Length = 139

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 20/74 (27%), Positives = 43/74 (58%)
 Frame = +1

Query: 517 IMFFTLNEIVQWIGLTVFEIWINLITLTIFSVLLALKIDGVLNSAWWTIFAPLFVSDAMN 696
           ++  TL E+  W  +T+FE+W++      F+ ++ LK+   ++ ++  + +PLFV  A +
Sbjct: 1   MVLLTLREMTTWFDITLFELWVH------FAAIICLKLHETVSISYMWVASPLFVGLAFS 54

Query: 697 AYFCCIVCIRMNLE 738
            +F  I+ +R  +E
Sbjct: 55  YFFVFIIYLRSCVE 68


>AL117204-39|CAB55145.4|  422|Caenorhabditis elegans Hypothetical
           protein Y116A8C.9 protein.
          Length = 422

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 595 LTIFSVLLALKIDGVLNSAWWTIFAPLFVSDAM 693
           L IF+ L  LK+DG ++ ++  +FAPL+  + +
Sbjct: 24  LLIFTALFTLKLDGKVSFSYAFVFAPLWACNLL 56


>U50308-8|AAG24032.1|  562|Caenorhabditis elegans Hypothetical
           protein F07C3.10 protein.
          Length = 562

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
 Frame = -2

Query: 783 YSTPRCXXXXXXXXXFQIHSYAYNTAK---VC---IHRITHKQRCKYC 658
           YS P C           IH  AY   K   +C   I RIT  ++C+YC
Sbjct: 48  YSVPACHGCKSFFRRAIIHKTAYPECKYDKMCFSKISRITRPRKCRYC 95


>Z83106-4|CAB05496.1|  343|Caenorhabditis elegans Hypothetical
           protein F22B8.5 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 688 HHSQTKVQILSTMHYSIHHQF*E-LTVQKI 602
           H  QTK+ +LS  H  +H QF   LT+Q +
Sbjct: 229 HGMQTKLSLLSAQHRRLHRQFFRALTIQVV 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,769,712
Number of Sequences: 27780
Number of extensions: 361811
Number of successful extensions: 830
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)