Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_K08
(921 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 31 0.30
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.53
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.93
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.7
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 27 4.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.9
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 26 8.6
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 30.7 bits (66), Expect = 0.30
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -1
Query: 897 GGXGGXXPGXXXGXAPGGXPXGXXRG 820
GG G PG G APGG P G G
Sbjct: 612 GGAPGGAPGGMPGGAPGGAPGGADNG 637
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -1
Query: 861 GXAPGGXPXGXXRGXXXGAXXXPXGGP 781
G APGG P G G GA GP
Sbjct: 612 GGAPGGAPGGMPGGAPGGAPGGADNGP 638
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -1
Query: 873 GXXXGXAPGGXPXGXXRGXXXGAXXXP 793
G G APGG P G G GA P
Sbjct: 612 GGAPGGAPGGMPGGAPGGAPGGADNGP 638
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.9 bits (64), Expect = 0.53
Identities = 24/74 (32%), Positives = 24/74 (32%), Gaps = 3/74 (4%)
Frame = -3
Query: 919 GXPAPXXGGXGXXXX-GXXGXXRPXGGAXXGXPGGXXGGXXXPXXGPPPXXXA-GGXXXX 746
G P P GG G G G G G PGG GG GP GG
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257
Query: 745 PPR-GGDPXXXXPP 707
P GG P P
Sbjct: 258 PGGFGGGPGGHGGP 271
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 567 GXXGXXXGGXGGGPQXXPPXPXG 499
G G GG GGG PP P G
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGG 206
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2
Query: 569 RGXXGXGXGXXAGAPXXXPPXPXGGXGCF 483
RG G G G G PP P GG G F
Sbjct: 183 RGHNGGGFGGFGGGSGGPPPGP-GGFGGF 210
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.93
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +2
Query: 734 PPGXXXXXPXRXXAGGGPPXGXXXAPXXXPRXXPXGXPPGAXPXXXPGXXPPXP 895
PP P R A PP G P P PP A P P P P
Sbjct: 388 PPAPPPAIPGRS-APALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLP 440
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/70 (25%), Positives = 20/70 (28%), Gaps = 3/70 (4%)
Frame = -3
Query: 823 GGXXGGXXXPXXGPPPXXXAGGXXXXPPRGGDPXXXXPP---XGPXXRPXPXXGXXXXRX 653
G P PPP A G PP+G PP +P P
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSN 387
Query: 652 FPXXPPXSGG 623
P PP G
Sbjct: 388 PPAPPPAIPG 397
Score = 26.2 bits (55), Expect = 6.5
Identities = 23/99 (23%), Positives = 26/99 (26%), Gaps = 9/99 (9%)
Frame = -1
Query: 915 PPPPPXGGXGGXXPGXXXGXAPGGXPXGXXRGXXXGAXXXPXGG---------PPPAXXR 763
PPPPP G P G + P G P PPPA
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRS-APPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397
Query: 762 XGXXXXXPGGGTXXXTXPPXXXXPXPAPXXAXXXPXXSP 646
P G + PP P P P +P
Sbjct: 398 RSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP 436
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/51 (31%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Frame = -1
Query: 795 PXGGP--PPAXXRXGXXXXXPGGGTXXXTXPPXXXXPXPAPXXAXXXPXXS 649
P G P PP P G PP P PAP A P S
Sbjct: 440 PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVAS 490
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/55 (25%), Positives = 14/55 (25%)
Frame = +3
Query: 735 PRGGXXXXPPAXXXGGGPXXGXXXPPXXPPGXPXXAPPXGRXXPXXPXXXXPXPP 899
P G PP P PP PP P P P PP
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/60 (25%), Positives = 16/60 (26%)
Frame = +2
Query: 716 VXXXVPPPGXXXXXPXRXXAGGGPPXGXXXAPXXXPRXXPXGXPPGAXPXXXPGXXPPXP 895
V PP P + G P P P GA P P PP P
Sbjct: 1036 VPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVP 1095
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -1
Query: 897 GGXGGXXPGXXXGXAPGGXPXG 832
GG G PG G APG P G
Sbjct: 616 GGMPGAAPGAAPGAAPGAAPGG 637
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 839 GXPPGAXPXXXPGXXPPXPPXGGGG 913
G PGA P PG P P G G
Sbjct: 616 GGMPGAAPGAAPGAAPGAAPGGDNG 640
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = -3
Query: 796 PXXGPPPXXXAGGXXXXPPRGGDPXXXXPPXGPXXRPXPXXGXXXXRXFPXXP 638
P PPP GG PP G PP P P P R + P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP---PPPAVSAGGSRYYAPAP 797
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/38 (31%), Positives = 12/38 (31%)
Frame = +2
Query: 785 PPXGXXXAPXXXPRXXPXGXPPGAXPXXXPGXXPPXPP 898
P P P G PP P G PP PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 25.8 bits (54), Expect = 8.6
Identities = 17/61 (27%), Positives = 17/61 (27%)
Frame = +2
Query: 731 PPPGXXXXXPXRXXAGGGPPXGXXXAPXXXPRXXPXGXPPGAXPXXXPGXXPPXPPXGGG 910
PPP P PP P P PPG P PP P G
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP------PPPGVAGAGPPPPPPPPPAVSAG 788
Query: 911 G 913
G
Sbjct: 789 G 789
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 8.6
Identities = 19/63 (30%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Frame = -1
Query: 915 PPPPPXGGXGGXXPGXXXGXAPGG-XPXGXXRGXXXGAXXXPXGGPPPAXXRXGXXXXXP 739
PPPP G G G G PGG G GA P R
Sbjct: 76 PPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMGGPGGAQFFSASDPNDIFERVFGHAFAG 135
Query: 738 GGG 730
GGG
Sbjct: 136 GGG 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,425
Number of Sequences: 5004
Number of extensions: 27563
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -