Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_K07
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.2  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 23/96 (23%), Positives = 25/96 (26%), Gaps = 3/96 (3%)
 Frame = +1

Query: 571  PPXGGXPXTPGXRGXPKXXXXAXXXPXXPKXXXGXXXPXXPN--PPXPVXKXKXPXGXXX 744
            P   G P  P   G P     +   P  PK          P+  PP P      P     
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136

Query: 745  XGXPXXXXXXPAVXP-QTPPLFPTRATPPXXGNPXP 849
             G P       A  P   P   P    P     P P
Sbjct: 1137 SGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -2

Query: 482 PPXPXGFXXXIKXXXPPPPPLXXXXKN 402
           PP P GF    +   PPPP      KN
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYVKKRKN 38


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -3

Query: 634 PKXXPLXSPXSPGXXXXPPLGGXXPXPPP 548
           P   P+  P   G    PPL    P PPP
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = -3

Query: 634 PKXXPLXSPXSPGXXXXPPLGGXXPXPPPP 545
           P   P     + G    PP G   P PPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 775  PAVXPQTPPLFPTRATPPXXGNPXP 849
            PA    TPP+ P  A PP    P P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTP 1707


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,435,990
Number of Sequences: 5004
Number of extensions: 15330
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)