Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_K07
(885 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 36 0.051
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 36 0.051
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 36 0.051
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 35 0.067
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 35 0.067
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 35 0.067
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 32 0.47
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 32 0.47
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 31 0.83
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 31 1.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 1.9
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 30 1.9
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 30 1.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 1.9
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 30 1.9
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 30 1.9
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 30 2.5
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 30 2.5
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 29 4.4
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 29 4.4
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 4.4
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 5.8
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 5.8
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 28 7.7
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 28 7.7
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 28 7.7
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 28 7.7
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 28 7.7
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 28 7.7
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 28 7.7
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 35.5 bits (78), Expect = 0.051
Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Frame = -3
Query: 610 PXSPGXXXXPPLGGXXPXPPPPA---XXXXXXXXXXXXXPXXPKPXPPPXXGXXXX*XGX 440
P P PP+ G P PPPP P P PPP G G
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFK--GGP 784
Query: 439 XPPPXP 422
PPP P
Sbjct: 785 PPPPPP 790
Score = 33.5 bits (73), Expect = 0.21
Identities = 21/72 (29%), Positives = 23/72 (31%)
Frame = -3
Query: 637 GPKXXPLXSPXSPGXXXXPPLGGXXPXPPPPAXXXXXXXXXXXXXPXXPKPXPPPXXGXX 458
G P + P PP+ G P PPPP P PPP G
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGG---------PPPPPPPGGLP 752
Query: 457 XX*XGXXPPPXP 422
G PPP P
Sbjct: 753 PISGGPPPPPPP 764
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/67 (31%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Frame = -3
Query: 613 SPXSPGXXXXPPLGGXXPXPP--PP-AXXXXXXXXXXXXXPXXPKPXPPPXXGXXXX*XG 443
S + G PP+ G P PP PP P P PPP G G
Sbjct: 697 STSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISG 756
Query: 442 XXPPPXP 422
PPP P
Sbjct: 757 GPPPPPP 763
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 35.5 bits (78), Expect = 0.051
Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Frame = -3
Query: 610 PXSPGXXXXPPLGGXXPXPPPPA---XXXXXXXXXXXXXPXXPKPXPPPXXGXXXX*XGX 440
P P PP+ G P PPPP P P PPP G G
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFK--GGP 784
Query: 439 XPPPXP 422
PPP P
Sbjct: 785 PPPPPP 790
Score = 33.5 bits (73), Expect = 0.21
Identities = 21/72 (29%), Positives = 23/72 (31%)
Frame = -3
Query: 637 GPKXXPLXSPXSPGXXXXPPLGGXXPXPPPPAXXXXXXXXXXXXXPXXPKPXPPPXXGXX 458
G P + P PP+ G P PPPP P PPP G
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGG---------PPPPPPPGGLP 752
Query: 457 XX*XGXXPPPXP 422
G PPP P
Sbjct: 753 PISGGPPPPPPP 764
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/67 (31%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Frame = -3
Query: 613 SPXSPGXXXXPPLGGXXPXPP--PP-AXXXXXXXXXXXXXPXXPKPXPPPXXGXXXX*XG 443
S + G PP+ G P PP PP P P PPP G G
Sbjct: 697 STSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISG 756
Query: 442 XXPPPXP 422
PPP P
Sbjct: 757 GPPPPPP 763
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 35.5 bits (78), Expect = 0.051
Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Frame = -3
Query: 610 PXSPGXXXXPPLGGXXPXPPPPA---XXXXXXXXXXXXXPXXPKPXPPPXXGXXXX*XGX 440
P P PP+ G P PPPP P P PPP G G
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFK--GGP 367
Query: 439 XPPPXP 422
PPP P
Sbjct: 368 PPPPPP 373
Score = 33.5 bits (73), Expect = 0.21
Identities = 21/72 (29%), Positives = 23/72 (31%)
Frame = -3
Query: 637 GPKXXPLXSPXSPGXXXXPPLGGXXPXPPPPAXXXXXXXXXXXXXPXXPKPXPPPXXGXX 458
G P + P PP+ G P PPPP P PPP G
Sbjct: 285 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGG---------PPPPPPPGGLP 335
Query: 457 XX*XGXXPPPXP 422
G PPP P
Sbjct: 336 PISGGPPPPPPP 347
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/67 (31%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Frame = -3
Query: 613 SPXSPGXXXXPPLGGXXPXPP--PP-AXXXXXXXXXXXXXPXXPKPXPPPXXGXXXX*XG 443
S + G PP+ G P PP PP P P PPP G G
Sbjct: 280 STSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISG 339
Query: 442 XXPPPXP 422
PPP P
Sbjct: 340 GPPPPPP 346
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 35.1 bits (77), Expect = 0.067
Identities = 21/64 (32%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = -3
Query: 610 PXSPGXXXXPPLGGXXPXPPPPAXXXXXXXXXXXXXPXXP-KPXPPPXXGXXXX*XGXXP 434
P P PPL G PPPPA P P PPP G P
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 297
Query: 433 PPXP 422
PP P
Sbjct: 298 PPPP 301
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Frame = -3
Query: 634 PKXXPLXSPXSP--GXXXXPPLGGXXPXPPPP 545
P P SP P G PP G P PPPP
Sbjct: 272 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 303
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/104 (23%), Positives = 27/104 (25%), Gaps = 7/104 (6%)
Frame = +1
Query: 559 KXTNPPXGGXPXTPGXRGXPKXXXX-------AXXXPXXPKXXXGXXXPXXPNPPXPVXK 717
K PP G P P +G P A P P+ P PP P
Sbjct: 228 KRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 287
Query: 718 XKXPXGXXXXGXPXXXXXXPAVXPQTPPLFPTRATPPXXGNPXP 849
P P P PP P G+P P
Sbjct: 288 SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 331
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = -3
Query: 598 GXXXXPPLGGXXPXPPPPAXXXXXXXXXXXXXPXXPKPXPPPXXGXXXX*XGXXPPPXP 422
G PP G P PPP P P PPP G PPP P
Sbjct: 227 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSP-PPPRTGSPPPPPTGSPPPPP 284
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/73 (26%), Positives = 19/73 (26%)
Frame = -3
Query: 646 GXXGPKXXPLXSPXSPGXXXXPPLGGXXPXPPPPAXXXXXXXXXXXXXPXXPKPXPPPXX 467
G P P P PP PPPPA P P PP
Sbjct: 251 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG 310
Query: 466 GXXXX*XGXXPPP 428
G PPP
Sbjct: 311 SLPPPQAGGSPPP 323
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 35.1 bits (77), Expect = 0.067
Identities = 21/64 (32%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = -3
Query: 610 PXSPGXXXXPPLGGXXPXPPPPAXXXXXXXXXXXXXPXXP-KPXPPPXXGXXXX*XGXXP 434
P P PPL G PPPPA P P PPP G P
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 318
Query: 433 PPXP 422
PP P
Sbjct: 319 PPPP 322
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Frame = -3
Query: 634 PKXXPLXSPXSP--GXXXXPPLGGXXPXPPPP 545
P P SP P G PP G P PPPP
Sbjct: 293 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 324
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/104 (23%), Positives = 27/104 (25%), Gaps = 7/104 (6%)
Frame = +1
Query: 559 KXTNPPXGGXPXTPGXRGXPKXXXX-------AXXXPXXPKXXXGXXXPXXPNPPXPVXK 717
K PP G P P +G P A P P+ P PP P
Sbjct: 249 KRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 308
Query: 718 XKXPXGXXXXGXPXXXXXXPAVXPQTPPLFPTRATPPXXGNPXP 849
P P P PP P G+P P
Sbjct: 309 SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 352
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = -3
Query: 598 GXXXXPPLGGXXPXPPPPAXXXXXXXXXXXXXPXXPKPXPPPXXGXXXX*XGXXPPPXP 422
G PP G P PPP P P PPP G PPP P
Sbjct: 248 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSP-PPPRTGSPPPPPTGSPPPPP 305
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/73 (26%), Positives = 19/73 (26%)
Frame = -3
Query: 646 GXXGPKXXPLXSPXSPGXXXXPPLGGXXPXPPPPAXXXXXXXXXXXXXPXXPKPXPPPXX 467
G P P P PP PPPPA P P PP
Sbjct: 272 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG 331
Query: 466 GXXXX*XGXXPPP 428
G PPP
Sbjct: 332 SLPPPQAGGSPPP 344
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 35.1 bits (77), Expect = 0.067
Identities = 21/64 (32%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = -3
Query: 610 PXSPGXXXXPPLGGXXPXPPPPAXXXXXXXXXXXXXPXXP-KPXPPPXXGXXXX*XGXXP 434
P P PPL G PPPPA P P PPP G P
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 303
Query: 433 PPXP 422
PP P
Sbjct: 304 PPPP 307
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Frame = -3
Query: 634 PKXXPLXSPXSP--GXXXXPPLGGXXPXPPPP 545
P P SP P G PP G P PPPP
Sbjct: 278 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 309
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/104 (23%), Positives = 27/104 (25%), Gaps = 7/104 (6%)
Frame = +1
Query: 559 KXTNPPXGGXPXTPGXRGXPKXXXX-------AXXXPXXPKXXXGXXXPXXPNPPXPVXK 717
K PP G P P +G P A P P+ P PP P
Sbjct: 234 KRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGG 293
Query: 718 XKXPXGXXXXGXPXXXXXXPAVXPQTPPLFPTRATPPXXGNPXP 849
P P P PP P G+P P
Sbjct: 294 SPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 337
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = -3
Query: 598 GXXXXPPLGGXXPXPPPPAXXXXXXXXXXXXXPXXPKPXPPPXXGXXXX*XGXXPPPXP 422
G PP G P PPP P P PPP G PPP P
Sbjct: 233 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSP-PPPRTGSPPPPPTGSPPPPP 290
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/73 (26%), Positives = 19/73 (26%)
Frame = -3
Query: 646 GXXGPKXXPLXSPXSPGXXXXPPLGGXXPXPPPPAXXXXXXXXXXXXXPXXPKPXPPPXX 467
G P P P PP PPPPA P P PP
Sbjct: 257 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTG 316
Query: 466 GXXXX*XGXXPPP 428
G PPP
Sbjct: 317 SLPPPQAGGSPPP 329
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 32.3 bits (70), Expect = 0.47
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -3
Query: 556 PPPPAXXXXXXXXXXXXXPXXPKPXPPPXXGXXXX*XGXXPPPXP 422
PPPP P P PPP G G PPP P
Sbjct: 610 PPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPP 654
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 32.3 bits (70), Expect = 0.47
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -3
Query: 556 PPPPAXXXXXXXXXXXXXPXXPKPXPPPXXGXXXX*XGXXPPPXP 422
PPPP P P PPP G G PPP P
Sbjct: 436 PPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPP 480
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 31.5 bits (68), Expect = 0.83
Identities = 19/67 (28%), Positives = 22/67 (32%)
Frame = -3
Query: 622 PLXSPXSPGXXXXPPLGGXXPXPPPPAXXXXXXXXXXXXXPXXPKPXPPPXXGXXXX*XG 443
PL + +P P + G P PPPP P PPP G G
Sbjct: 481 PLINTNAPPPPPMPSINGHAPNPPPPPPLLGIAPMSTN------APPPPPMPGMAPLSTG 534
Query: 442 XXPPPXP 422
PP P
Sbjct: 535 APTPPPP 541
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/53 (32%), Positives = 20/53 (37%)
Frame = +1
Query: 691 PNPPXPVXKXKXPXGXXXXGXPXXXXXXPAVXPQTPPLFPTRATPPXXGNPXP 849
P PP P + P G P A+ P PP P + PP G P P
Sbjct: 113 PGPPGPPGRDGRPGAPGRPGNPGPPGRDGALLPGPPPKPPCQKCPP--GPPGP 163
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/78 (26%), Positives = 22/78 (28%), Gaps = 7/78 (8%)
Frame = -3
Query: 634 PKXXPLXSPXSPGXXXXPPLGGXXPXPPPPAXXXXXXXXXXXXXPXXP-------KPXPP 476
P P +P PP G P PPPP P P PP
Sbjct: 261 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 320
Query: 475 PXXGXXXX*XGXXPPPXP 422
P G PPP P
Sbjct: 321 PPSRFGPPGMGGMPPPPP 338
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/74 (32%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Frame = -3
Query: 637 GPKXXPLXSPXSPGXXXXPPLGGXXPXPPPPAXXXXXXXXXXXXXPXXPKPXPP--PXXG 464
GP P P P PP G P PPPP P P PP P G
Sbjct: 309 GPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPG---------MRYPGGMPPPPPPRYPSAG 359
Query: 463 XXXX*XGXXPPPXP 422
G PPP P
Sbjct: 360 -----PGMYPPPPP 368
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/66 (30%), Positives = 22/66 (33%)
Frame = -2
Query: 620 FGIPRXPGVXGXPPXGGXVXFXXXXXXXXXXXXFGEGGGPXXPKTXPPXPXGFXXXIKXX 441
FG P G+ PP G G G P P + PP P I
Sbjct: 325 FGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMI--- 381
Query: 440 XPPPPP 423
PPPPP
Sbjct: 382 PPPPPP 387
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/86 (26%), Positives = 24/86 (27%)
Frame = +1
Query: 571 PPXGGXPXTPGXRGXPKXXXXAXXXPXXPKXXXGXXXPXXPNPPXPVXKXKXPXGXXXXG 750
P G P PG G P A P P P PP P P G
Sbjct: 118 PGKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCK-PCPQGPPGPPGPPGAPGDPGEAGTPG 176
Query: 751 XPXXXXXXPAVXPQTPPLFPTRATPP 828
P P+ PP P A P
Sbjct: 177 RPGTDATPGLPGPRGPPGPPGEAGQP 202
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 30.3 bits (65), Expect = 1.9
Identities = 27/102 (26%), Positives = 29/102 (28%), Gaps = 8/102 (7%)
Frame = +1
Query: 571 PPXGGXPXTPGXRG-XPKXXXXAXXXPXXPKXXXGXXXPXXPN-------PPXPVXKXKX 726
PP GG P G G P P G P P+ PP P
Sbjct: 176 PPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGA 235
Query: 727 PXGXXXXGXPXXXXXXPAVXPQTPPLFPTRATPPXXGNPXPF 852
P G P+ P P F PP G P PF
Sbjct: 236 PPSGGPPGPFDPSGAPPSGGPPGP--FNPSGAPPSGGPPGPF 275
Score = 29.9 bits (64), Expect = 2.5
Identities = 26/95 (27%), Positives = 28/95 (29%)
Frame = +1
Query: 571 PPXGGXPXTPGXRGXPKXXXXAXXXPXXPKXXXGXXXPXXPNPPXPVXKXKXPXGXXXXG 750
PP GG P G P P P G P PP P P G
Sbjct: 416 PPSGGPPGPFNPSGAPPSGG-----PPGPFNPSGA--PPSGGPPGPFNPSGAPPSGGPPG 468
Query: 751 XPXXXXXXPAVXPQTPPLFPTRATPPXXGNPXPFS 855
P+ P P F PP G P PF+
Sbjct: 469 PFNPSGAPPSGGPPGP--FDPSGAPPSGGPPGPFN 501
Score = 29.5 bits (63), Expect = 3.3
Identities = 26/95 (27%), Positives = 28/95 (29%)
Frame = +1
Query: 571 PPXGGXPXTPGXRGXPKXXXXAXXXPXXPKXXXGXXXPXXPNPPXPVXKXKXPXGXXXXG 750
PP GG P G P P P G P PP P P G
Sbjct: 326 PPSGGPPGPFDPSGAPPSGG-----PPGPFNPSGA--PPSGGPPGPFDPSGAPPSGGPPG 378
Query: 751 XPXXXXXXPAVXPQTPPLFPTRATPPXXGNPXPFS 855
P+ P P F PP G P PF+
Sbjct: 379 PFDPSGAPPSGGPPGP--FDPSGAPPSGGPPGPFN 411
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/78 (26%), Positives = 22/78 (28%), Gaps = 7/78 (8%)
Frame = -3
Query: 634 PKXXPLXSPXSPGXXXXPPLGGXXPXPPPPAXXXXXXXXXXXXXPXXP-------KPXPP 476
P P +P PP G P PPPP P P PP
Sbjct: 271 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 330
Query: 475 PXXGXXXX*XGXXPPPXP 422
P G PPP P
Sbjct: 331 PPSRFGPPGMGGMPPPPP 348
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/74 (32%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Frame = -3
Query: 637 GPKXXPLXSPXSPGXXXXPPLGGXXPXPPPPAXXXXXXXXXXXXXPXXPKPXPP--PXXG 464
GP P P P PP G P PPPP P P PP P G
Sbjct: 319 GPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPG---------MRYPGGMPPPPPPRYPSAG 369
Query: 463 XXXX*XGXXPPPXP 422
G PPP P
Sbjct: 370 -----PGMYPPPPP 378
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/66 (30%), Positives = 22/66 (33%)
Frame = -2
Query: 620 FGIPRXPGVXGXPPXGGXVXFXXXXXXXXXXXXFGEGGGPXXPKTXPPXPXGFXXXIKXX 441
FG P G+ PP G G G P P + PP P I
Sbjct: 335 FGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMI--- 391
Query: 440 XPPPPP 423
PPPPP
Sbjct: 392 PPPPPP 397
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/83 (27%), Positives = 24/83 (28%), Gaps = 1/83 (1%)
Frame = +1
Query: 583 GXPXTPGXRGXPKXXXXAXXXPXXPKXXXGXXXPXXPNPPXPVXKXKXPXGXXXXGXPXX 762
G P PG +G PK P P P P P P P G P
Sbjct: 189 GPPGPPGKQG-PKGPNGEPGAPGTPGGNALPGPPGPPGPQGPPGADGLPGNPGAPGVPGQ 247
Query: 763 XXXXPAV-XPQTPPLFPTRATPP 828
P P PP P PP
Sbjct: 248 VIEVPGTPGPAGPPGPPGPIGPP 270
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/68 (29%), Positives = 21/68 (30%)
Frame = -3
Query: 748 PXXPXRGXXXIFXRGXGGLXXXAXPXXXXXLGXXGXXGPKXXPLXSPXSPGXXXXPPLGG 569
P P I G G + P G G G P SP PG P GG
Sbjct: 257 PAGPPGPPGPIGPPGQPGAPGSSQPGPQGPPGDPGIDGAPGNP-GSPGEPGPPGQPGAGG 315
Query: 568 XXPXPPPP 545
PPP
Sbjct: 316 GCDHCPPP 323
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/86 (26%), Positives = 24/86 (27%)
Frame = +1
Query: 571 PPXGGXPXTPGXRGXPKXXXXAXXXPXXPKXXXGXXXPXXPNPPXPVXKXKXPXGXXXXG 750
P G P PG G P A P P P PP P P G
Sbjct: 118 PGKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCK-PCPQGPPGPPGPPGAPGDPGEAGTPG 176
Query: 751 XPXXXXXXPAVXPQTPPLFPTRATPP 828
P P+ PP P A P
Sbjct: 177 RPGTDATPGLPGPRGPPGPPGEAGQP 202
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 521 FGEGGGPXXPKTXPPXPXGFXXXIKXXXPPPPPL 420
+G GGG P PP P G + PPPPP+
Sbjct: 651 YGSGGGSSMPMPVPP-PGGLGGFMPPP-PPPPPM 682
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 521 FGEGGGPXXPKTXPPXPXGFXXXIKXXXPPPPPL 420
+G GGG P PP P G + PPPPP+
Sbjct: 651 YGSGGGSSMPMPVPP-PGGLGGFMPPP-PPPPPM 682
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 29.1 bits (62), Expect = 4.4
Identities = 25/91 (27%), Positives = 26/91 (28%)
Frame = +1
Query: 571 PPXGGXPXTPGXRGXPKXXXXAXXXPXXPKXXXGXXXPXXPNPPXPVXKXKXPXGXXXXG 750
P G P PG G P P P P PP P P G
Sbjct: 147 PCPQGPPGPPGPPGPP-GDSGEPGSPGLPGQDAAPGEPGPKGPPGP------PGAPGAPG 199
Query: 751 XPXXXXXXPAVXPQTPPLFPTRATPPXXGNP 843
P P V Q+ PL P PP P
Sbjct: 200 TPGE----PGVPAQSEPLIPGEPGPPGEAGP 226
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 29.1 bits (62), Expect = 4.4
Identities = 25/91 (27%), Positives = 26/91 (28%)
Frame = +1
Query: 571 PPXGGXPXTPGXRGXPKXXXXAXXXPXXPKXXXGXXXPXXPNPPXPVXKXKXPXGXXXXG 750
P G P PG G P P P P PP P P G
Sbjct: 147 PCPQGPPGPPGPPGPP-GDSGEPGSPGLPGQDAAPGEPGPKGPPGP------PGAPGAPG 199
Query: 751 XPXXXXXXPAVXPQTPPLFPTRATPPXXGNP 843
P P V Q+ PL P PP P
Sbjct: 200 TPGE----PGVPAQSEPLIPGEPGPPGEAGP 226
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/69 (28%), Positives = 20/69 (28%)
Frame = -3
Query: 613 SPXSPGXXXXPPLGGXXPXPPPPAXXXXXXXXXXXXXPXXPKPXPPPXXGXXXX*XGXXP 434
SP P PP P PPPP P P PPP P
Sbjct: 1337 SPPPPPPPPPPPSDDLTPVPPPP--PPPPTMSKAPTGVPLPVPPPPPLFSPSMI-LPPPP 1393
Query: 433 PPXPXXXXK 407
PP P K
Sbjct: 1394 PPLPSEEKK 1402
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Frame = +1
Query: 646 PXXPKXXXGXXXPXXPNPPXPVXKXKXPXGXXXXGXPXXXXXXPA-VXPQTPPLFPT 813
P P P P PP P K P G P P+ + P PP P+
Sbjct: 1342 PPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPPLFSPSMILPPPPPPLPS 1398
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/68 (27%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Frame = +1
Query: 646 PXXPKXXXGXXXPXXPNPPXPVXKXKXPXGXXXXGXPXXXXXXP--AVXPQTPPLFPTRA 819
P P G P PP P P G P P P PP F +
Sbjct: 305 PPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYPPFFPPPPPHFMRPS 364
Query: 820 TPPXXGNP 843
+PP G P
Sbjct: 365 SPPTDGGP 372
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/68 (27%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Frame = +1
Query: 646 PXXPKXXXGXXXPXXPNPPXPVXKXKXPXGXXXXGXPXXXXXXP--AVXPQTPPLFPTRA 819
P P G P PP P P G P P P PP F +
Sbjct: 305 PPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYPPFFPPPPPHFMRPS 364
Query: 820 TPPXXGNP 843
+PP G P
Sbjct: 365 SPPTDGGP 372
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = -3
Query: 676 PXXXXXLGXXGXXGPKXXPLXSPXSPGXXXXPPLGGXXPXPPPP 545
P G G G P +P +PG PP+ P PPP
Sbjct: 104 PGPPGPAGAPGKPGKPGRP-GAPGTPGTPGKPPVAPCEPTTPPP 146
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = -3
Query: 676 PXXXXXLGXXGXXGPKXXPLXSPXSPGXXXXPPLGGXXPXPPPP 545
P G G G P +P +PG PP+ P PPP
Sbjct: 99 PGPPGPAGAPGKPGKPGRP-GAPGTPGTPGKPPVAPCEPTTPPP 141
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/54 (29%), Positives = 18/54 (33%)
Frame = -3
Query: 706 GXGGLXXXAXPXXXXXLGXXGXXGPKXXPLXSPXSPGXXXXPPLGGXXPXPPPP 545
G G P G G G P +P PG PP+ P PPP
Sbjct: 97 GGGNCEACCLPGPAGPAGAPGNPGRPGKP-GAPGLPGNPGKPPVQPCEPITPPP 149
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = -3
Query: 676 PXXXXXLGXXGXXGPKXXPLXSPXSPGXXXXPPLGGXXPXPPPP 545
P G G G P +P +PG PP+ P PPP
Sbjct: 99 PGPPGPAGAPGKPGKPGRP-GAPGTPGTPGKPPVAPCEPTTPPP 141
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 622 PLXSPXSPGXXXXPPLGGXXPXPPPP 545
P+ + +P PP+G P PPPP
Sbjct: 227 PVNAHGAPPPPPLPPVGAGAPPPPPP 252
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 622 PLXSPXSPGXXXXPPLGGXXPXPPPP 545
P+ + +P PP+G P PPPP
Sbjct: 213 PVNAHGAPPPPPLPPVGAGAPPPPPP 238
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 622 PLXSPXSPGXXXXPPLGGXXPXPPPP 545
P+ + +P PP+G P PPPP
Sbjct: 213 PVNAHGAPPPPPLPPVGAGAPPPPPP 238
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,679,400
Number of Sequences: 27780
Number of extensions: 186390
Number of successful extensions: 996
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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