Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_K06
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    29   0.89 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   2.7  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    27   4.7  

>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 766 YYSRFQSIMNQARX*GLCRYYSNVFNF 686
           Y+   +++M+  +   LCRYY + FNF
Sbjct: 313 YWYLVRAVMSDGKHRNLCRYYEDFFNF 339


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +1

Query: 220 SRYSYCH*LTRSSADTQIIAVKEAYETKPXTGAPSIISDTCRARDAHXFATAKTTS 387
           S +S    L+ SS +      +  Y T P     ++ + TC +R     +T  TTS
Sbjct: 539 SSFSGTSALSSSSNEETTTTTQVTYTTSPEETTTTMTTTTCSSRPEETISTVSTTS 594


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -3

Query: 525 IARPVCPLDRNPWRIPVTPATYTPNIRMNVHWQSIA 418
           I +P+ P DRN W        YT   +    W SIA
Sbjct: 318 IYKPLDPKDRNAWEESELKKLYTLVEQEGTRWNSIA 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,353
Number of Sequences: 5004
Number of extensions: 55577
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)