Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_K04
(890 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 96 5e-21
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.008
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 32 0.13
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 30 0.38
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 29 0.67
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 28 2.1
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 27 2.7
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 27 4.7
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 6.3
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 26 6.3
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 6.3
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 26 6.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.3
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 26 8.3
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 26 8.3
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 96.3 bits (229), Expect = 5e-21
Identities = 66/185 (35%), Positives = 97/185 (52%), Gaps = 3/185 (1%)
Frame = +1
Query: 199 LRPVNSFKSDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTS 378
L+ V + SD NL DKFL + +DGWVP++ + F R+ + + + I NAL KS
Sbjct: 68 LKQVEFYFSDTNLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRF-QPLEAIVNALRKSPE 126
Query: 379 GLLEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASLDDLLNYFKQFQEV 558
LLEV E +KVRR PL ++ K + RS+Y KGF D D + K F+E
Sbjct: 127 -LLEVDEAGEKVRR--MIPLVRVD---NKSVMERSVYCKGFG-DEKDDTQIALEKFFEEN 179
Query: 559 ENVIMRRYVEKSTKKRLFKGSVFATFKTREQAEKFM---NAKGHKYGDNELLTLWQEDYL 729
I + + K+ FKGSVF FK + A KF+ K+G++EL + +++Y+
Sbjct: 180 AGPISAVRMRRDDDKK-FKGSVFVEFKEPDVANKFLEKVKTAPLKWGEDELTIMSKKEYV 238
Query: 730 QQKQE 744
K E
Sbjct: 239 DMKAE 243
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 35.9 bits (79), Expect = 0.008
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +1
Query: 232 NLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSED 402
NL +D FL++ + D+G+VPL L FNR+ + D +++ A S +++V+ D
Sbjct: 341 NLCKDMFLRKHMD-DEGYVPLAFLASFNRIKSFSTDLNLLHAAC--KASDIIDVAID 394
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +1
Query: 622 VFATFKTREQAEKFMNA-KGH-KYGDNELLTLWQEDYLQQKQEE 747
VF FK Q + F + KG Y D+E+L+ +ED LQ++QEE
Sbjct: 131 VFNRFKADGQEKDFEDTDKGQIMYSDDEILSEGEEDALQKQQEE 174
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 30.3 bits (65), Expect = 0.38
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Frame = +1
Query: 343 DVIANALNKSTSGLLEVSEDNKKVRRNPEQPL------PEMNEELRKEIC--NRS---IY 489
D+ AL+ +T E E++K N Q E NE+ +E NR ++
Sbjct: 107 DIRGQALSSATWDNAEDGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKMF 166
Query: 490 AKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFKTREQAEKFMN 669
G + + D L +YF+QF EV + + R ST R +G F TFK + + M+
Sbjct: 167 IGGLNWETTDDSLRDYFEQFGEVLDCTVMR---DSTTGR-SRGFGFLTFKNPKCVNEVMS 222
Query: 670 AKGHKYG 690
+ H G
Sbjct: 223 KEHHLDG 229
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 29.5 bits (63), Expect = 0.67
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Frame = +1
Query: 223 SDVNLHRDKFLQEQIKLDDGWVPL--EILTKFNRLAKLTE----DTDVIANALNKSTSGL 384
S +N + KFL + K + L E+ TK +++L E D + L+ ++ L
Sbjct: 236 SSLNANTQKFLDDLDKEIFSQIQLAEELQTKLGTVSELVESVPNDVAEVQRRLSSVSTAL 295
Query: 385 LEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASLDDLLNYFKQFQE 555
L S++ + +R ++ N + I + AS D L+NYF+QF E
Sbjct: 296 LIDSDEIETTKRVVDEDTS--NARISSRILDVFKTPGATYPFASNDPLMNYFEQFTE 350
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1
Query: 320 RRLNFVRISNGTHPSSNFICSCRNLSRCRFTSLLNE 213
R N R+ + P+SN +C RN S+CRF +L E
Sbjct: 352 RSSNRFRLFPASTPNSNGLC--RNDSKCRFLMILPE 385
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 526 LLNYFKQFQEVENVI-MRRYVEKSTKKRLFKGSVFATFKTREQAEKFM 666
LLN+FK+++ VE + + R + + K F VF TF+++ + E M
Sbjct: 161 LLNFFKKYRSVERIASLSRSISEFQKS--FYEQVFDTFQSQFKKESGM 206
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 583 VEKSTKKR-LFKGSVFATFKTREQAEKFMNAKGHKYGDNELLTLWQEDYLQQKQEE 747
VE +K L + KT Q E NA G +YGD+ + W D+L E+
Sbjct: 27 VEADSKPNDLTAANSIVDLKTNSQHEN-ANAAGKEYGDSGVSESWVLDFLSVTGEK 81
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/62 (22%), Positives = 27/62 (43%)
Frame = +1
Query: 475 NRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFKTREQA 654
N +++ + A DDL N+F +++ ++ E +G F TF E A
Sbjct: 4 NSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGEN----RGYGFVTFSMLEDA 59
Query: 655 EK 660
++
Sbjct: 60 QR 61
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 289 PLEILTKFNRLAKLTEDTDVIANALNKSTSGL---LEVSEDNKKVR 417
P+ I TK R A + + +A LN+ TSG+ L + N+ VR
Sbjct: 617 PVLITTKIKRNANIWDLQKHLAGLLNRDTSGIRIWLMTNRQNRTVR 662
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 403 NKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASL 519
N V R N++ KE+ NR + KGFA D S+
Sbjct: 543 NSAVLRRQSSQSSGANDD--KEVRNRKVVEKGFANDCSV 579
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 6.3
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Frame = +1
Query: 187 LKKNLRP-VNSFKSDVNLHRD--KFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIAN 357
LKK+L + S SD+N H D K Q L +P+ K E T+
Sbjct: 323 LKKHLDDTIPSNVSDIN-HNDHLKIPQSPSSLSPSKIPIRKKRKLKDTVSNCEFTEE--- 378
Query: 358 ALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELRK 465
+ +S LLE + K R PL + N+E+ +
Sbjct: 379 --DSESSFLLETIQPTKSTLRRSISPLKKRNDEINE 412
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 487 YAKGFAKDASLD-DLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFKTRE 648
Y K K+ + D + L+YF++F + V +R Y ++ K F+ ++F + E
Sbjct: 983 YTKKNPKEPTADVNSLSYFEKFFVLFVVNLRHYFQERMKALKFRSTLFGDLEILE 1037
>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +1
Query: 562 NVIMRRYVEKSTKKRLFKGSVFATFKTREQAEKFMNAKGHKYGDNELLTLWQEDYLQQ 735
N+++R ++K +FK S F +AE+FM D +++ W E+++ +
Sbjct: 215 NILLRYCLQKGVSP-IFKASSFVHIHENVKAEQFMLDP----SDMDVMDTWDEEFVSK 267
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 278 SSNFICSCRNLSRC 237
S NF+CSCR S C
Sbjct: 7 SRNFLCSCRGFSVC 20
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,258
Number of Sequences: 5004
Number of extensions: 62647
Number of successful extensions: 220
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -