Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_K03
         (1004 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.3  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
 Frame = +2

Query: 824  PXPXGLFSPXPPXXLXXPPXXRLLX--PSGXGXGAXFPPXPPPXXAPPV 964
            P P G   P P   +  PP        P      A  PP PPP  APPV
Sbjct: 1153 PAPSGA-PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPV 1200



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
 Frame = +2

Query: 824  PXPXGLFSPXPPXXLXXPPXXRLLX-PSGXGXGAXFPPXPPPXXAPPV 964
            P P     P P      PP       P         PP PPP  APPV
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPV 1219



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 14/47 (29%), Positives = 16/47 (34%)
 Frame = +2

Query: 824  PXPXGLFSPXPPXXLXXPPXXRLLXPSGXGXGAXFPPXPPPXXAPPV 964
            P P G      P  +   P   +  P         PP P P  APPV
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPV 1123


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = +2

Query: 830 PXGLFSPXPPXXLXXPPXXRLLXPSGXGXGAXFPPXPPP 946
           P G  +P PP     P   R   P         PP PPP
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 877 PXXAPFGPLRXGGWXXFPPXPPPXXXPP 960
           P  AP  P    G    PP PP    PP
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAPAPP 477



 Score = 25.8 bits (54), Expect = 9.6
 Identities = 18/63 (28%), Positives = 22/63 (34%)
 Frame = +3

Query: 279 PPPPXPXRKTXFRPXLLSFCVXPAPXXXGXLSLAXNPXXPPXGVXRXGGGALXXFPXPLP 458
           PPPP P R+   +P          P   G  + +  P  PP      G   L       P
Sbjct: 312 PPPPPPSRRNRGKP----------PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP 361

Query: 459 PPP 467
           PPP
Sbjct: 362 PPP 364



 Score = 25.8 bits (54), Expect = 9.6
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 917 GAXFPPXPPPXXAPPVXGXXPXPL 988
           G   PP PPP  AP   G  P PL
Sbjct: 357 GRSAPPPPPPRSAPST-GRQPPPL 379


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 450  PLPPPPXXVXRFFFFXPPPXXGPPVPXG 533
            P PPPP          PPP   PP+P G
Sbjct: 1705 PTPPPPP------MSVPPPPSAPPMPAG 1726


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = -1

Query: 1004 GGPXXXGGXXXXPXRGGXXXGGGXGGXKXXPPXRRGP 894
            GGP   GG       G    GGG GG    P    GP
Sbjct: 235  GGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = +2

Query: 824 PXPXGLFSPXPPXXLXXPPXXRLLXPSGXGXGAXFPPXPPPXXAPPVXG 970
           P P  +  P P   +  PP      P G   GA  PP PPP  A    G
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPP--PPPGVA-GAGPPPPPPPPPAVSAGG 789



 Score = 25.8 bits (54), Expect = 9.6
 Identities = 24/83 (28%), Positives = 26/83 (31%)
 Frame = +3

Query: 270 LGXPPPPXPXRKTXFRPXLLSFCVXPAPXXXGXLSLAXNPXXPPXGVXRXGGGALXXFPX 449
           L  PPPP P                PAP   G       P  PP GV   G       P 
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGP-----PPPPPPPGVAGAGPP-----PP 778

Query: 450 PLPPPPXXVXRFFFFXPPPXXGP 518
           P PPP        ++ P P   P
Sbjct: 779 PPPPPAVSAGGSRYYAPAPQAEP 801


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,756,115
Number of Sequences: 5004
Number of extensions: 21486
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 521265546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)