Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_K02
(887 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 30 0.38
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 30 0.51
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 30 0.51
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po... 28 2.0
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 28 2.0
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 27 2.7
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 27 2.7
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 27 3.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 3.6
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 27 4.7
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 4.7
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 27 4.7
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 27 4.7
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 27 4.7
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 26 6.2
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc... 26 6.2
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 26 6.2
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 26 8.2
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 8.2
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|... 26 8.2
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 502 KKEKNKTELGIHSDDEFEKSLLEIDEIDH--LEKNKNIDFTPLENGNNDKSHERKLQKEI 675
+K NK L H DD+F L+I + EK ++F + D ++ ++Q I
Sbjct: 378 QKLNNKEALISHYDDDFRAKELKISRLSESLREKAGLLEFQSSVSEQRDLLYQEQIQSSI 437
Query: 676 KQKESI 693
K E++
Sbjct: 438 KDMENV 443
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 29.9 bits (64), Expect = 0.51
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 565 LEIDEIDHLEKNKNIDFTPLENGNNDKSHERKLQKEIKQKESI 693
+E+D + E+ N + LEN N+ ERKLQ+++ + ES+
Sbjct: 624 VEMDLVKRKEEQLNAQLSQLENLQNE---ERKLQEKVNEHESL 663
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 29.9 bits (64), Expect = 0.51
Identities = 29/99 (29%), Positives = 47/99 (47%)
Frame = +1
Query: 502 KKEKNKTELGIHSDDEFEKSLLEIDEIDHLEKNKNIDFTPLENGNNDKSHERKLQKEIKQ 681
KK K KT G D + + + + + +H +K+K ++G++DK E K +K+IK
Sbjct: 175 KKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDK--EEKKKKKIK- 231
Query: 682 KESIDLXPSLKDKEKKTDSYXVNNLXNXSIKDEVKEGNK 798
LKDK + T S ++VKEGN+
Sbjct: 232 ---------LKDKPESTSSV-----------EKVKEGNR 250
>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +1
Query: 547 EFEKSLLEIDEIDHLEKNKNIDFTPLENGNNDKSH---ERKLQKEIKQKES-IDLXPSLK 714
+++ + ++I +EK N+D +G N K E+ Q+E K+KE+ DL + +
Sbjct: 270 QYKGDVPNFEDISKMEKENNLDIMIEASGFNKKQSKELEKYRQEEEKRKENGDDLSDNYE 329
Query: 715 DKEKKTD 735
++E++ +
Sbjct: 330 EEEEEKE 336
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 538 SDDE-FEKSLLEIDEIDHLEKNKNI-DFTPLENGNNDKSHE---RKLQKEIKQ 681
SDDE K ++ + I + NKN LEN N K H+ RK+ +EIK+
Sbjct: 255 SDDESLSKEIVNSNPIMCMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIKK 307
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 27.5 bits (58), Expect = 2.7
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Frame = +1
Query: 418 SKSTAELKEVKPIDLFGNAPIIRTEPIVK--KEKNKTELGIHSDDEFEKSLLEIDEIDHL 591
SK A ++ + +DL +I T P + + + GI F+ + + E+D L
Sbjct: 293 SKQLAPIRRISALDLKN---LIETSPHITFLDVREPVQFGICRLPLFKN--IPLSEVDSL 347
Query: 592 EKNKNIDFTPLENGNNDKSHERKLQKEIKQKESIDLXPSLKDKEKKTD 735
+ +GN ++ RKLQ+ Q + D+ LK + D
Sbjct: 348 QNLSGKVCVICRSGNTSQTAVRKLQELNPQADIFDVVAGLKGWSTEVD 395
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/76 (25%), Positives = 30/76 (39%)
Frame = +1
Query: 502 KKEKNKTELGIHSDDEFEKSLLEIDEIDHLEKNKNIDFTPLENGNNDKSHERKLQKEIKQ 681
KK K E + EK + +E + K + E + ERK ++E +
Sbjct: 5 KKRAEKAEAAKSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEKRKAALERKAERERLE 64
Query: 682 KESIDLXPSLKDKEKK 729
KE ++ PS K K
Sbjct: 65 KEEMESLPSKGGKGSK 80
>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 240
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 574 DEIDHLEKNKNIDFTPLENGNNDKSHERKLQKEIKQKESIDLXPSLKDKEKKTD 735
DE L N+ T ++ +SHE K+Q+ + + + I+ K + K+ +
Sbjct: 114 DEATSLGYRDNVSLTQIKTYLEMESHEEKIQEIVSRNKEIEATEERKRRIKQLE 167
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.1 bits (57), Expect = 3.6
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 589 LEKNKNIDFTPLENGNNDKSHERKLQKEIKQKESIDLXPSLKDKEKKTDSY--XVNNLXN 762
L K + +D T LE E K E +KE +L L++ K+TD++ VN+L
Sbjct: 1343 LNKYERVDPTQLE--------ELKKNCEALEKEKQELETKLQETAKETDTFKQQVNSLNE 1394
Query: 763 --XSIKDEVKEGNKR 801
++K EV++ N +
Sbjct: 1395 EVENLKKEVEQANTK 1409
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 586 HLEKNKNIDFTPLENGNNDKSHERKLQKEIKQKESIDLXPSLKDKEKKTDS 738
HL KN L + N+KS E + E K++ + P + E KT S
Sbjct: 29 HLNSFKNDPKKELNSNLNEKSVEESSKNETKEQFNSSSIPRESESEGKTAS 79
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 631 GNNDKSHERKLQKEIKQKESIDLXPSLKDKEKKTDSYXVNN 753
G +S RK + +K+++DL S +E + VNN
Sbjct: 112 GEGKRSKNRKRSSKHSEKQAVDLKSSNSSQETSSSKGSVNN 152
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = +1
Query: 487 TEPIVKKEKNKTELGIHSDDE----FEKSLLEIDEIDHLEKN-KNIDFTPLENGNNDKSH 651
++ + + +K K S+DE F +S E DE++ E +N + + + N+ +SH
Sbjct: 51 SDSMSQNDKKKDSSLNESEDEDFAGFGESASENDELESAESEAENDEESSSQKSNSKESH 110
Query: 652 --ERKLQKEIK 678
+KLQKE K
Sbjct: 111 AQRKKLQKERK 121
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 577 EIDHLEKNKNIDFTPLENGNNDKSHERKLQKEIKQKESIDL 699
+I+ + +++ TP + GN D+ ++L K++ Q +DL
Sbjct: 82 QINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVDL 122
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 553 EKSLLEIDEIDHLEKNKNIDFTPLENGNNDKSHERKLQK 669
E+ +E++E D + D T NGN++ S E LQK
Sbjct: 740 ERDDIEVEEDDAEAQELENDNTNTTNGNDNVSSEEALQK 778
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 26.2 bits (55), Expect = 6.2
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Frame = +1
Query: 424 STAELKE-----VKPIDLFGN-APIIRTEPIVKKEKNKTELGIHSDDEFEKSLLEIDEID 585
ST EL E ++ + +F + +P T PI + +KT HS +F KSL++ DE +
Sbjct: 121 STLELSENRQNVLERVKVFNSCSPPKPTNPITIIDNDKT----HSFKKFYKSLVKEDEEN 176
Query: 586 HLEKNKN 606
+EK N
Sbjct: 177 GIEKKIN 183
>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 637 CFHFLRV*NQYFYFFLDDQSHLFQEDSFRI 548
C+ FL V Y + F DD+ + EDS +
Sbjct: 93 CYSFLEVERIYGFIFSDDKISYWDEDSVEL 122
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 538 SDDEFEKSLLEIDEIDHLEKNKNIDFTPLENGNNDKSHE-RKLQKEIKQ 681
S D F K ++++ HL+ ++N T E ++ S E KL K + +
Sbjct: 615 SSDSFRKYANTLNDLRHLKSSRNRKATSNETQSSSNSTETSKLSKNVSE 663
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 25.8 bits (54), Expect = 8.2
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = +1
Query: 454 IDLFGNAPIIRTEPIVKKEKNKTELGIHSDDEFEKSLLEIDEIDHLEKNKNIDFTPLENG 633
IDL NAP I+ ++KK+K + + G S + KS+ + K ++ E
Sbjct: 200 IDL--NAPKIQRPSVIKKDKKEKKEGKPSQEASVKSVEKAP--------KGLEGAKKEKQ 249
Query: 634 NNDKSHERKLQKEIKQK 684
N + ++K +K+ K+K
Sbjct: 250 NKKEKKDKKDKKDKKEK 266
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 634 NNDKSHERKLQKEIKQKESIDLXPSLKDKEKKTDSYXVNNLXNXSIKD 777
++D+SHERK + ++ S L +D+ S N L + + D
Sbjct: 211 DDDRSHERKRSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYD 258
>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 538 SDDEFEKSLLEIDEIDHLEKNKNIDFTPLE 627
+D EFE S + I++ID L+ +D T ++
Sbjct: 117 NDFEFENSTIIIEDIDILQSTHALDSTKIQ 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,077,940
Number of Sequences: 5004
Number of extensions: 33708
Number of successful extensions: 148
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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