Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_K02
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    24   1.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.6  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 50  NSSFEIESNIAKRYFPRKYTYKVYFKNQISN 142
           N++++   N    Y    Y  K+Y+KN I N
Sbjct: 93  NNNYKYNYNNKYNYNNNNYNKKLYYKNYIIN 123


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 86  RYFPRKYTYKVYFKNQISNEHDKA 157
           R FPR + +K   + Q+SN+ D++
Sbjct: 66  RDFPRSHRFKSLPRCQLSNKRDRS 89


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 409 NKKSKSTAELKEVKPIDLFG 468
           NKK + + E+ +VK ID+ G
Sbjct: 262 NKKVRISNEMSKVKVIDMTG 281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,827
Number of Sequences: 438
Number of extensions: 2279
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)