Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_J24
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.13 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.70 
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    26   6.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 540 PPPPPPXXXXKXPXPPPXP 484
           PPPPPP      P PPP P
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 540 PPPPPPXXXXKXPXPPPXP 484
           PPPPPP      P P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIP 750



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 540 PPPPPPXXXXKXPXPPPXP 484
           PPPPPP        PPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 541 PPPPPXXXXXXXPXXPPPXP 482
           PPPPP       P  PPP P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 541 PPPPPXXXXXXXPXXPPPXP 482
           PPPPP       P  PPP P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 540 PPPPPPXXXXKXPXPPPXP 484
           PPPPPP        PPP P
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 540 PPPPPPXXXXKXPXPPPXP 484
           PPPPPP    + P  PP P
Sbjct: 9   PPPPPPPPGFEPPSQPPPP 27



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 540 PPPPPPXXXXKXPXPPPXP 484
           PPPPPP        PPP P
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 540 PPPPPPXXXXKXPXPPPXP 484
           PPPPPP        PPP P
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 540 PPPPPPXXXXKXPXPPPXP 484
           PPPPP       P PPP P
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 541 PPPPPXXXXXXXPXXPPP 488
           PPPPP       P  PPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 262 DLHHHRIRDLK*KTKRLNLPVNFLVFQF 179
           +L+    RDL  KTKRL  P N L+ QF
Sbjct: 119 ELNFVAARDLLIKTKRLPKPFNNLLIQF 146


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -1

Query: 537  PPPPPXXXXKXPXPPPXP 484
            PPPPP      P  PP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMP 1724


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,507,831
Number of Sequences: 5004
Number of extensions: 23635
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)