Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_J20
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    51   2e-07
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    31   0.20 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    28   1.9  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   2.5  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   3.3  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   5.8  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   7.7  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    26   7.7  

>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 39/109 (35%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
 Frame = +1

Query: 268 IWVLGKKYSAIQDL---DRIRRDITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMV 438
           IW LG  Y  I+D    ++   D  S+I  TYR G    G E +TSD GWGCM+R  Q +
Sbjct: 26  IWFLGHSYK-IEDSQWPEKFLYDSFSLITITYRSGIE--GLENMTSDTGWGCMIRSTQTL 82

Query: 439 LGVALVRVHLSVDWVWSPETRDPTYLKIIQRFEERKQAXYSIHQVALMG 585
           L   L         +  PE +     +I+  F +   A +SIHQ   MG
Sbjct: 83  LANCL--------RICYPEKQ---LKEILALFADEPSAPFSIHQFVTMG 120


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 194 LICVIYRERMVIMLNLTIFLKQRKVSGYWGKN 289
           L+ ++Y  R+ + LNLT    Q  V GYWG N
Sbjct: 7   LLLLVYSARLALSLNLT---NQTAVLGYWGSN 35


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 506 GSLVSGDHTQSTDKCTLTRATPNTICPHRNIQPHPLSEVKPSSP 375
           GSL S   + +      + A P T+   RN  P+P +  +P+ P
Sbjct: 325 GSLHSKSPSPAFTANRFSPAAPTTVSSERNAPPYPSAPTRPTPP 368


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
 Frame = -2

Query: 440 NTICPHRNIQPHPLSEVKPSSPIG--TKPFLYVHHIIDVISLLIRSKSCIALYFFPSTQI 267
           +T+       PHP S V+P  P G    P L V  + +  ++      C+ +  +P  + 
Sbjct: 140 DTVISDSPTSPHPPSFVQPHPPYGIFAAPILDVRVLTNPGAVKRTYNLCLDISKYPLLEG 199

Query: 266 LSFVLGISLGSTLLPSAPDR*HISNTASILNHSFFTKRFI 147
             + +G S G     S  +  H+++   I  H  +  + +
Sbjct: 200 KDWKIGGSFGIMPPNSDAEVLHLAHLLKIPQHELYVTKVL 239


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 466 SVL*QEQHLIPSVHIVTYSPILYQKSNLHHQLVQ 365
           +VL ++   +P +  +T SP   +K NL+H+L Q
Sbjct: 169 AVLSKKHFTLPRIFGMTASPFTGKKGNLYHRLYQ 202


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 316  IRRDITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVL 441
            IR  +TSI +   RK FV   DE L + +  GC++     +L
Sbjct: 1317 IRNRLTSIRFIVNRKFFVCFKDETLPNVEIEGCLIEKSNAIL 1358


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 454 QEQHLIPSVHIVTYSPILYQKSN 386
           Q+QH IP ++   YSP+L   S+
Sbjct: 340 QQQHRIPKLNASNYSPLLSPSSH 362


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 281 GKNTVLYKIWIVLEE-ISHQ*YGVRTEKALYQLVMKV 388
           G  T+LY IW+VL   +    Y +   K L +L+ K+
Sbjct: 2   GFATILYSIWVVLSSFVILSAYQLEVRKFLVKLLSKI 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,254
Number of Sequences: 5004
Number of extensions: 66139
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)