Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_J20
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0216 + 15495395-15495566,15495648-15495733,15495824-154958...    76   4e-14
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522...    72   5e-13
11_03_0126 + 10371536-10371596,10372467-10372544,10373968-103741...    29   6.1  
09_04_0363 + 16957949-16958361,16958524-16958527                       29   6.1  

>03_03_0216 +
           15495395-15495566,15495648-15495733,15495824-15495874,
           15496005-15496390,15496760-15496898,15497540-15497595,
           15497712-15497782,15497876-15498081
          Length = 388

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 48/132 (36%), Positives = 65/132 (49%), Gaps = 12/132 (9%)
 Frame = +1

Query: 256 TKESIWVLGKKYS-AIQDLDR----------IRRDITSIIWCTYRKGFVPIGDEGLTSDK 402
           T   +W LGK Y  + ++L               D +S IW TYRKGF  I D   TSD 
Sbjct: 12  TSSDVWFLGKCYKLSSEELSNSSDCESGNAAFLEDFSSRIWITYRKGFDAISDSKYTSDV 71

Query: 403 GWGCMLRCGQMVLGVALVRVHLSVDW-VWSPETRDPTYLKIIQRFEERKQAXYSIHQVAL 579
            WGCM+R  QM++  AL+  HL   W   S +   P Y+ I+  F + +   +SIH   L
Sbjct: 72  NWGCMVRSSQMLVAQALIFHHLGRSWRKPSQKPYSPEYIGILHMFGDSEACAFSIHN--L 129

Query: 580 MGALKEXKLASG 615
           + A K   LA+G
Sbjct: 130 LQAGKSYGLAAG 141


>04_04_1624 -
           34849385-34849410,34849748-34851052,34852121-34852294,
           34852386-34852456,34852563-34852618,34853047-34853185,
           34853310-34853695,34853801-34853851,34853936-34854021,
           34854112-34854553,34856241-34856315,34856457-34856593,
           34856679-34856838,34856917-34857012,34857093-34857247,
           34857900-34858032
          Length = 1163

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 43/122 (35%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
 Frame = +1

Query: 256 TKESIWVLGKKYS-----AIQDLDR------IRRDITSIIWCTYRKGFVPIGDEGLTSDK 402
           T   +W LGK Y      +  D D          D +S IW TYR+GF  I D   TSD 
Sbjct: 354 TSSDVWFLGKCYKLSSEESSSDSDSESGHATFLEDFSSRIWITYRRGFDAISDSKYTSDV 413

Query: 403 GWGCMLRCGQMVLGVALVRVHLSVDWVWSPE-TRDPTYLKIIQRFEERKQAXYSIHQVAL 579
            WGCM+R  QM++  AL+  HL   W    E   +P Y+ I+  F + +   +SIH +  
Sbjct: 414 NWGCMVRSSQMLVAQALIFHHLGRSWRRPLEKPYNPEYIGILHMFGDSEACAFSIHNLLQ 473

Query: 580 MG 585
            G
Sbjct: 474 AG 475


>11_03_0126 +
           10371536-10371596,10372467-10372544,10373968-10374127,
           10374286-10374610,10374708-10374860,10374985-10375236,
           10375356-10375445,10375543-10375621,10375712-10375818,
           10375921-10376048,10376329-10376419
          Length = 507

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +1

Query: 286 KYSAIQDLDRIRRDITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVLGVALVRVH 465
           K+S  Q ++ I R IT++I   +RK    +   G T   GW  M+    + L   L    
Sbjct: 369 KFST-QVVNEINR-ITTVIPGGFRKALTDVQVNGYTIPSGWLVMISPMGVHLNPKLFEDP 426

Query: 466 LSVD-WVWSPETR 501
           L  D W W+ E R
Sbjct: 427 LKFDPWRWTEEKR 439


>09_04_0363 + 16957949-16958361,16958524-16958527
          Length = 138

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 488 DHTQSTDKCTLTRATPNTICPHRNIQPHPLSEVK 387
           DH ++T   T T +TPN I P       P S +K
Sbjct: 85  DHLKATSPATATASTPNIIVPMTPAATAPTSSLK 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,834,189
Number of Sequences: 37544
Number of extensions: 382607
Number of successful extensions: 791
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)