Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_J20
         (843 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-3|CAB54483.1|  493|Caenorhabditis elegans Hypothetical ...   109   2e-24
Z68302-4|CAB54515.1|  521|Caenorhabditis elegans Hypothetical pr...    52   7e-07
U23514-7|AAC46539.3|  493|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical ...    28   9.5  

>AL110500-3|CAB54483.1|  493|Caenorhabditis elegans Hypothetical
           protein Y87G2A.3 protein.
          Length = 493

 Score =  109 bits (262), Expect = 2e-24
 Identities = 49/106 (46%), Positives = 68/106 (64%)
 Frame = +1

Query: 268 IWVLGKKYSAIQDLDRIRRDITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVLGV 447
           I+ LGK+ S    ++ +++ +TS  W TYR+ F PIG  G ++D+GWGCMLRC QM+LG 
Sbjct: 37  IFALGKEISKEDGIEAMKKYVTSRFWFTYRRDFSPIGGTGPSTDQGWGCMLRCAQMLLGE 96

Query: 448 ALVRVHLSVDWVWSPETRDPTYLKIIQRFEERKQAXYSIHQVALMG 585
            L+R H+   + W  E     Y KI+Q F + K A YSIHQ+A MG
Sbjct: 97  VLLRRHIGRHFEWDIEKTSEIYEKILQMFFDEKDALYSIHQIAQMG 142



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 582 GCPEGKXVGQWXXLIHRSS-LKKLTVYDKWSXLXI 683
           G  EGK V +W      +  +KKLT++D WS + +
Sbjct: 142 GVTEGKEVSKWFGPNTAAQVMKKLTIFDDWSNIAV 176


>Z68302-4|CAB54515.1|  521|Caenorhabditis elegans Hypothetical
           protein ZK792.8 protein.
          Length = 521

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 22/135 (16%)
 Frame = +1

Query: 277 LGKKYSAIQDLDRIRR-------DITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQM 435
           LG++YS   D   +R        D  S +W TYR  F  + D   T+D GWGCM+R  QM
Sbjct: 151 LGRRYSTSVDESGLRSGFENFCSDYYSRLWITYRTDFPALLDTDTTTDCGWGCMIRTTQM 210

Query: 436 VLGVALVRVHLSVDWVWSPETR------------DPTYLK---IIQRFEERKQAXYSIHQ 570
           ++  A++      DW ++   R            D   ++   I++ FE++  A   IH+
Sbjct: 211 MVAQAIMVNRFGRDWRFTRRKRSHVAAHGDEDDFDREKIQEWMILKLFEDKPTAPLGIHK 270

Query: 571 VALMGALKEXKLASG 615
           +  + A+ + K A G
Sbjct: 271 MVGIAAMGKGKKAVG 285


>U23514-7|AAC46539.3|  493|Caenorhabditis elegans Hypothetical
           protein F48E8.3 protein.
          Length = 493

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/55 (36%), Positives = 23/55 (41%)
 Frame = -2

Query: 470 DKCTLTRATPNTICPHRNIQPHPLSEVKPSSPIGTKPFLYVHHIIDVISLLIRSK 306
           D   + RA    I    NIQ HP + V P  P     FL    I    +LLI SK
Sbjct: 237 DGVKIARALGAKIIGMENIQIHPTAFVDPKDPSAGTKFLAAEAIRGKGALLINSK 291


>AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical
           protein Y39E4B.4 protein.
          Length = 223

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -2

Query: 338 IDVISLLIRSKSCIALYFFPSTQILSFVLGISLGSTLL 225
           + VI  +IRSK  +A YF     ++ F+L I++G T+L
Sbjct: 87  VGVIGAVIRSKYLLAPYFL--FMVILFLLEIAIGITVL 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,860,951
Number of Sequences: 27780
Number of extensions: 360373
Number of successful extensions: 891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)